meekrob/MEME.5.3.0.container:latest

$ singularity pull shub://meekrob/MEME.5.3.0.container:latest

Singularity Recipe

BootStrap: docker
From: ubuntu:16.04

%post

    # install some system deps
    apt-get -y update
    # gcc
    apt-get -y install build-essential
    apt-get -y install locales curl bzip2 less unzip git wget vim 
    apt-get -y install perl libxml-simple-perl libjson-perl
    apt-get -y install mpi libgs-dev libexpat1-dev libcr-dev mpich mpich-doc
    # this is a X11 dep
    apt-get -y install libxext6
    # tools to open PDF and HTML files
    apt-get -y install firefox xpdf ghostscript
    # some extra devel libs 
    apt-get -y install zlib1g-dev libssl-dev libpng-dev uuid-dev
    # other
    locale-gen en_US.UTF-8

    apt-get clean

    # download meme and compile
    curl -sSL -O https://meme-suite.org/meme/meme-software/5.3.2/meme-5.3.2.tar.gz
    tar -zxf meme-5.3.2.tar.gz
    cd meme-5.3.2
    ./configure --prefix=/usr/local --enable-build-libxml2 --enable-build-libxslt && make && make install


%environment
    export LANG=en_US.UTF-8
    export LANGUAGE=en_US:en
    export LC_ALL=en_US.UTF-8
    export OMPI_MCA_opal_cuda_support=true
    export PATH=/usr/local/libexec/meme-5.3.2:$PATH

Collection

• Name: meekrob/MEME.5.3.0.container
• License: None

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