mcw-rcc/r-base:3.5.1

$ singularity pull shub://mcw-rcc/r-base:3.5.1

Singularity Recipe

BootStrap: docker
From: ubuntu:16.04

%help
    This container runs R.

%labels
    Maintainer Matthew Flister
    Version 09.18.18
    R_Version 3.5.1

%apprun R
    exec R "${@}"

%apprun Rscript
    exec Rscript "${@}"

%runscript
    exec R "${@}"

%environment 
    export R_LIBS=/usr/local/lib/R/library:/extR/library1:/extR/library2

%post
    mkdir -p /scratch/global /scratch/local /rcc/stor1/refdata /rcc/stor1/projects /rcc/stor1/depts /extR/library1 /extR/library2
    apt-get update
    apt-get -y install \
        wget \
        build-essential \
        software-properties-common \
        apt-transport-https \
        locales
    echo "LC_ALL=en_US.UTF-8" >> /etc/environment
    echo "en_US.UTF-8 UTF-8" >> /etc/locale.gen
    echo "LANG=en_US.UTF-8" > /etc/locale.conf
    locale-gen en_US.UTF-8
    apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E084DAB9
    add-apt-repository 'deb https://cran.mtu.edu/bin/linux/ubuntu xenial/'
    apt-get update &&\
    apt-get -y build-dep r-base 
    apt-get clean

    export R_VERSION=3.5.1
    export R_URL=https://cran.r-project.org/src/base/R-3/R-${R_VERSION}.tar.gz
    wget $R_URL
    tar -xvf R-${R_VERSION}.tar.gz
    cd R-${R_VERSION}
    ./configure --enable-R-shlib --with-blas --with-lapack
    make && make install
    cd .. && rm -rf R-${R_VERSION}*

Collection


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Metrics

key value
id /containers/mcw-rcc-r-base-3.5.1
collection name mcw-rcc/r-base
branch 3.5.1
tag 3.5.1
commit 796e2a96229fd0ded5aacb5c2eb62d27ac321a12
version (container hash) aa775918e99af2e91b67a103d6021715
build date 2021-02-26T05:52:14.961Z
size (MB) 2086
size (bytes) 845152287
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
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