mcw-rcc/qiime2:2018.6

$ singularity pull shub://mcw-rcc/qiime2:2018.6

Singularity Recipe

Bootstrap: docker
From: ubuntu:16.04

%labels
Maintainer Matthew Flister
Version 2018.6

%help
This container runs QIIME 2.

%environment
    

%runscript
    source activate qiime2-2018.6
    exec qiime "${@}"

%post
    # default mount points
    mkdir -p /scratch/global /scratch/local /rcc/stor1/refdata /rcc/stor1/projects /rcc/stor1/depts
    
    # Install necessary packages
    apt-get update && apt-get install -y --no-install-recommends \
        build-essential \
        gcc-multilib \
        ca-certificates \
        wget
    apt-get clean

    # Install miniconda
    wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -O miniconda3.sh
    bash miniconda3.sh -b -p /opt/miniconda3
    rm miniconda3.sh
    export PATH="/opt/miniconda3/bin:$PATH"
    
    # Install QIIME 2
    wget https://data.qiime2.org/distro/core/qiime2-2018.6-py35-linux-conda.yml
    conda env create -n qiime2-2018.6 --file qiime2-2018.6-py35-linux-conda.yml
    rm -rf qiime2-2018.6-py35-linux-conda.yml

Collection


View on Datalad

Metrics

key value
id /containers/mcw-rcc-qiime2-2018.6
collection name mcw-rcc/qiime2
branch master
tag 2018.6
commit 75ec4c043a083f5203ade18ac50eaacd1d30ce06
version (container hash) dc9351c18aecb1006fb25c70266b648d
build date 2018-09-19T22:54:40.165Z
size (MB) 6755
size (bytes) 2937532447
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
We cannot guarantee that all containers will still exist on GitHub.