mcw-rcc/basemount:latest
$ singularity pull shub://mcw-rcc/basemount:latest
Singularity Recipe
Bootstrap: docker
From: ubuntu:16.04
%labels
Maintainer Matthew Flister
Version v1.0
%help
This container runs Basemount.
%post
mkdir -p /scratch/global /scratch/local /rcc/stor1/refdata /rcc/stor1/projects /rcc/stor1/depts
# Install necessary packages.
apt-get update && apt-get install -y --no-install-recommends \
build-essential \
gcc-multilib \
ca-certificates \
zlib1g-dev \
libssl-dev \
curl \
wget
apt-get clean
rm -rf /var/lib/apt/lists/*
bash -c "$(curl -L https://basemount.basespace.illumina.com/install)"
wget "https://api.bintray.com/content/basespace/BaseSpaceCLI-EarlyAccess-BIN/latest/\$latest/amd64-linux/bs?bt_package=latest" -O /usr/local/bin/bs && chmod +x /usr/local/bin/bs
wget "https://api.bintray.com/content/basespace/BaseSpace-Copy-BIN/\$latest/linux/bscp?bt_package=develop" -O /usr/local/bin/bs-cp && chmod +x /usr/local/bin/bs-cp
Collection
- Name: mcw-rcc/basemount
- License: MIT License
View on Datalad
Metrics
key | value |
---|---|
id | /containers/mcw-rcc-basemount-latest |
collection name | mcw-rcc/basemount |
branch | master |
tag | latest |
commit | 9f514d2b6ceeacb5ddc0bafc0ca5381c864289cd |
version (container hash) | 223a7db7b0dec28dab254ca87b3caba0 |
build date | 2018-12-14T05:20:15.395Z |
size (MB) | 449 |
size (bytes) | 167596063 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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