mcw-rcc/basemount:latest

$ singularity pull shub://mcw-rcc/basemount:latest

Singularity Recipe

Bootstrap: docker
From: ubuntu:16.04

%labels
Maintainer Matthew Flister
Version v1.0

%help
This container runs Basemount.

%post
    mkdir -p /scratch/global /scratch/local /rcc/stor1/refdata /rcc/stor1/projects /rcc/stor1/depts

    # Install necessary packages.
    apt-get update && apt-get install -y --no-install-recommends \
        build-essential \
        gcc-multilib \
        ca-certificates \
        zlib1g-dev \
        libssl-dev \
        curl \
        wget
    apt-get clean
    rm -rf /var/lib/apt/lists/*
    bash -c "$(curl -L https://basemount.basespace.illumina.com/install)"
    wget "https://api.bintray.com/content/basespace/BaseSpaceCLI-EarlyAccess-BIN/latest/\$latest/amd64-linux/bs?bt_package=latest" -O /usr/local/bin/bs && chmod +x /usr/local/bin/bs
    wget "https://api.bintray.com/content/basespace/BaseSpace-Copy-BIN/\$latest/linux/bscp?bt_package=develop" -O /usr/local/bin/bs-cp && chmod +x /usr/local/bin/bs-cp

Collection


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Metrics

key value
id /containers/mcw-rcc-basemount-latest
collection name mcw-rcc/basemount
branch master
tag latest
commit 9f514d2b6ceeacb5ddc0bafc0ca5381c864289cd
version (container hash) 223a7db7b0dec28dab254ca87b3caba0
build date 2018-12-14T05:20:15.395Z
size (MB) 449
size (bytes) 167596063
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
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