mcw-rcc/anvio:5.1

$ singularity pull shub://mcw-rcc/anvio:5.1

Singularity Recipe

Bootstrap: docker
From: ubuntu:16.04

%labels
Maintainer Matthew Flister
Version 09.12.18

%help
This container runs anvi'o 5.1.0.

%environment
    SHELL=/bin/bash
    export PATH="/opt/miniconda3/bin:$PATH"

%post
    # default mount points
    mkdir -p /scratch/global /scratch/local /rcc/stor1/refdata /rcc/stor1/projects /rcc/stor1/depts

    # Install necessary packages
    apt-get update && apt-get install -y --no-install-recommends \
        build-essential \
        gcc-multilib \
        libboost-all-dev \
        libhdf5-serial-dev \
        zlib1g-dev \
        python3-pip \
        pkg-config \
        python3-dev \
        python3-setuptools \
        wget
    apt-get clean

    # install miniconda
    wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -O miniconda3.sh
    bash miniconda3.sh -b -p /opt/miniconda3
    rm miniconda3.sh
    export PATH="/opt/miniconda3/bin:$PATH"

    # install pacbio apps
    conda install -c bioconda -c conda-forge anvio diamond bwa

Collection


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Metrics

key value
id /containers/mcw-rcc-anvio-5.1
collection name mcw-rcc/anvio
branch master
tag 5.1
commit a06ef7c2dec241f46782ad202265878c08248377
version (container hash) e149ed2f37bf3ffe0ef8b740017dba00
build date 2019-08-28T21:51:40.441Z
size (MB) 4989
size (bytes) 2085060639
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
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