mbhall88/Singularity_recipes:spades
$ singularity pull shub://mbhall88/Singularity_recipes:spades
Singularity Recipe
Bootstrap: debootstrap
OSVersion: bionic
MirrorURL: http://us.archive.ubuntu.com/ubuntu/
%environment
PATH=/usr/local/bin:$PATH
%post
apt update
apt install -y software-properties-common
apt-add-repository universe
apt update
apt install -y git wget build-essential
export LC_ALL=C.UTF-8
export LANG=C.UTF-8
echo 'export LC_ALL=C.UTF-8' >> $SINGULARITY_ENVIRONMENT
echo 'export LANG=C.UTF-8' >> $SINGULARITY_ENVIRONMENT
# ========================
# INSTALL spades
# ========================
VERSION="3.13.0"
URL=https://github.com/ablab/spades/releases/download/v"$VERSION"/SPAdes-"$VERSION"-Linux.tar.gz
ln -s /usr/bin/python3.6 /usr/bin/python
apt install -y python3-distutils
wget -O - "$URL" | tar xzf -
cd SPAdes*/bin
echo "export PATH=$(pwd):$PATH" >> $SINGULARITY_ENVIRONMENT
Collection
- Name: mbhall88/Singularity_recipes
- License: MIT License
View on Datalad
Metrics
key | value |
---|---|
id | /containers/mbhall88-Singularity_recipes-spades |
collection name | mbhall88/Singularity_recipes |
branch | master |
tag | spades |
commit | 31bfb0f5d5af5a41bbd883bba963a15031f63c55 |
version (container hash) | 9a6111fe0232ac6bf01260212d4357e9 |
build date | 2019-08-15T05:25:58.602Z |
size (MB) | 649 |
size (bytes) | 238313503 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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