mbhall88/Singularity_recipes:spades

$ singularity pull shub://mbhall88/Singularity_recipes:spades

Singularity Recipe

Bootstrap: debootstrap
OSVersion: bionic
MirrorURL: http://us.archive.ubuntu.com/ubuntu/

%environment
  PATH=/usr/local/bin:$PATH

%post
    apt update
    apt install -y software-properties-common
    apt-add-repository universe
    apt update
    apt install -y git wget build-essential
    export LC_ALL=C.UTF-8
    export LANG=C.UTF-8
    echo 'export LC_ALL=C.UTF-8' >> $SINGULARITY_ENVIRONMENT
    echo 'export LANG=C.UTF-8' >> $SINGULARITY_ENVIRONMENT

    # ========================
    # INSTALL spades
    # ========================
    VERSION="3.13.0"
	URL=https://github.com/ablab/spades/releases/download/v"$VERSION"/SPAdes-"$VERSION"-Linux.tar.gz
	ln -s /usr/bin/python3.6 /usr/bin/python
	apt install -y python3-distutils
	wget -O - "$URL" | tar xzf -
	cd SPAdes*/bin
	echo "export PATH=$(pwd):$PATH" >> $SINGULARITY_ENVIRONMENT

Collection


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Metrics

key value
id /containers/mbhall88-Singularity_recipes-spades
collection name mbhall88/Singularity_recipes
branch master
tag spades
commit 31bfb0f5d5af5a41bbd883bba963a15031f63c55
version (container hash) 9a6111fe0232ac6bf01260212d4357e9
build date 2019-08-15T05:25:58.602Z
size (MB) 649
size (bytes) 238313503
SIF Download URL (please use pull with shub://)
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Singularity Recipe Singularity Recipe on Datalad
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