mbhall88/Singularity_recipes:samtools
$ singularity pull shub://mbhall88/Singularity_recipes:samtools
Singularity Recipe
Bootstrap: debootstrap
OSVersion: bionic
MirrorURL: http://us.archive.ubuntu.com/ubuntu/
%environment
export PATH=/usr/local/bin:$PATH
export LC_ALL=C.UTF-8
export LANG=C.UTF-8
%post
apt update
apt install -y software-properties-common
apt-add-repository universe
apt update
apt install -y wget build-essential
# ================================
# INSTALL samtools
# ================================
VERSION="1.9"
URL=https://github.com/samtools/samtools/releases/download/${VERSION}/samtools-${VERSION}.tar.bz2
apt install -y libncurses5-dev \
libbz2-dev \
liblzma-dev \
zlib1g-dev
wget "$URL" -O - | tar -jxf -
cd samtools*
./configure --prefix=/usr/local
make
make install
Collection
- Name: mbhall88/Singularity_recipes
- License: MIT License
View on Datalad
Metrics
key | value |
---|---|
id | /containers/mbhall88-Singularity_recipes-samtools |
collection name | mbhall88/Singularity_recipes |
branch | master |
tag | samtools |
commit | 99a5ed2cf05b7d61351570515e22d024b786cefe |
version (container hash) | fa53d7d0f9d4b7089c2e19a0aa555119 |
build date | 2019-01-15T14:08:05.534Z |
size (MB) | 635 |
size (bytes) | 223711263 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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