mbhall88/Singularity_recipes:porechop
$ singularity pull shub://mbhall88/Singularity_recipes:porechop
Singularity Recipe
Bootstrap: debootstrap
OSVersion: bionic
MirrorURL: http://us.archive.ubuntu.com/ubuntu/
%environment
PATH=/usr/local/bin:$PATH
%post
apt update
apt install -y software-properties-common
apt-add-repository universe
apt update
apt install -y git wget build-essential
export LC_ALL=C.UTF-8
export LANG=C.UTF-8
echo 'export LC_ALL=C.UTF-8' >> $SINGULARITY_ENVIRONMENT
echo 'export LANG=C.UTF-8' >> $SINGULARITY_ENVIRONMENT
# ================================
# INSTALL porechop
# ================================
VERSION="0.2.4"
URL=https://github.com/rrwick/Porechop/archive/v"$VERSION".tar.gz
apt-get install -y python3-setuptools \
python3-pkg-resources \
python3-distutils \
python3-lib2to3
wget -O - "$URL" | tar xzf -
cd Porechop*
python3 setup.py install
Collection
- Name: mbhall88/Singularity_recipes
- License: MIT License
View on Datalad
Metrics
key | value |
---|---|
id | /containers/mbhall88-Singularity_recipes-porechop |
collection name | mbhall88/Singularity_recipes |
branch | master |
tag | porechop |
commit | c45bed96c50e230a37fe94bda3d991b41c41620f |
version (container hash) | 3499ffb89a2bbc6e7945f07620541b3e |
build date | 2019-09-13T08:25:48.729Z |
size (MB) | 633 |
size (bytes) | 227250207 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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