mbhall88/Singularity_recipes:pilon
$ singularity pull shub://mbhall88/Singularity_recipes:pilon
Singularity Recipe
Bootstrap: debootstrap
OSVersion: bionic
MirrorURL: http://us.archive.ubuntu.com/ubuntu/
%environment
PATH=/usr/local/bin:$PATH
%post
apt update
apt install -y software-properties-common
apt-add-repository universe
apt update
apt install -y git wget build-essential
export LC_ALL=C.UTF-8
export LANG=C.UTF-8
echo 'export LC_ALL=C.UTF-8' >> $SINGULARITY_ENVIRONMENT
echo 'export LANG=C.UTF-8' >> $SINGULARITY_ENVIRONMENT
# ================================
# INSTALL pilon
# ================================
VERSION="1.22"
URL=https://github.com/broadinstitute/pilon/releases/download/v"$VERSION"/pilon-"$VERSION".jar
cd /usr/local/bin
wget -O pilon.jar "$URL"
# install java
apt-get install -y debconf-utils
add-apt-repository -y ppa:webupd8team/java
apt-get update
echo "oracle-java8-installer shared/accepted-oracle-license-v1-1 select true" | debconf-set-selections
apt-get install -y oracle-java8-installer
echo '#!/usr/bin/env sh\njava -Xmx16G -jar /usr/local/bin/pilon.jar $@' > pilon
chmod +x pilon
Collection
- Name: mbhall88/Singularity_recipes
- License: MIT License
View on Datalad
Metrics
key | value |
---|---|
id | /containers/mbhall88-Singularity_recipes-pilon |
collection name | mbhall88/Singularity_recipes |
branch | master |
tag | pilon |
commit | c45bed96c50e230a37fe94bda3d991b41c41620f |
version (container hash) | 9cf480ad69bf29ca7ec846efef652765 |
build date | 2020-04-28T08:53:47.548Z |
size (MB) | 1212 |
size (bytes) | 630157343 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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