mbhall88/Singularity_recipes:pilon

$ singularity pull shub://mbhall88/Singularity_recipes:pilon

Singularity Recipe

Bootstrap: debootstrap
OSVersion: bionic
MirrorURL: http://us.archive.ubuntu.com/ubuntu/

%environment
  PATH=/usr/local/bin:$PATH

%post
    apt update
    apt install -y software-properties-common
    apt-add-repository universe
    apt update
    apt install -y git wget build-essential
    export LC_ALL=C.UTF-8
    export LANG=C.UTF-8
    echo 'export LC_ALL=C.UTF-8' >> $SINGULARITY_ENVIRONMENT
    echo 'export LANG=C.UTF-8' >> $SINGULARITY_ENVIRONMENT

    # ================================
    # INSTALL pilon 
    # ================================
    VERSION="1.22"
    URL=https://github.com/broadinstitute/pilon/releases/download/v"$VERSION"/pilon-"$VERSION".jar
    cd /usr/local/bin
    wget -O pilon.jar "$URL"
    # install java
    apt-get install -y debconf-utils
    add-apt-repository -y ppa:webupd8team/java
    apt-get update
    echo "oracle-java8-installer shared/accepted-oracle-license-v1-1 select true" | debconf-set-selections
    apt-get install -y oracle-java8-installer

    echo '#!/usr/bin/env sh\njava -Xmx16G -jar /usr/local/bin/pilon.jar $@' > pilon
    chmod +x pilon

Collection


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Metrics

key value
id /containers/mbhall88-Singularity_recipes-pilon
collection name mbhall88/Singularity_recipes
branch master
tag pilon
commit c45bed96c50e230a37fe94bda3d991b41c41620f
version (container hash) 9cf480ad69bf29ca7ec846efef652765
build date 2020-04-28T08:53:47.548Z
size (MB) 1212
size (bytes) 630157343
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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