mbhall88/Singularity_recipes:ngm
$ singularity pull shub://mbhall88/Singularity_recipes:ngm
Singularity Recipe
Bootstrap: debootstrap
OSVersion: bionic
MirrorURL: http://us.archive.ubuntu.com/ubuntu/
%environment
PATH=/usr/local/bin:$PATH
%post
apt update
apt install -y software-properties-common
apt-add-repository universe
apt update
apt install -y git wget build-essential
export LC_ALL=C.UTF-8
export LANG=C.UTF-8
echo 'export LC_ALL=C.UTF-8' >> $SINGULARITY_ENVIRONMENT
echo 'export LANG=C.UTF-8' >> $SINGULARITY_ENVIRONMENT
#================================
# INSTALL NGM
#================================
VERSION="0.5.5"
URL=https://github.com/Cibiv/NextGenMap/archive/v"$VERSION".tar.gz
apt install -y cmake
wget -O - "$URL" | tar xzf -
cd NextGenMap*
mkdir -p build/
cd build/
cmake ..
make
cd ../bin/ngm*
chmod 777 ngm
echo "export PATH=$(pwd):$PATH" >> $SINGULARITY_ENVIRONMENT
Collection
- Name: mbhall88/Singularity_recipes
- License: MIT License
View on Datalad
Metrics
key | value |
---|---|
id | /containers/mbhall88-Singularity_recipes-ngm |
collection name | mbhall88/Singularity_recipes |
branch | master |
tag | ngm |
commit | c45bed96c50e230a37fe94bda3d991b41c41620f |
version (container hash) | b90ff1e4827eb3f36ca37475fe5b0075 |
build date | 2018-11-05T14:28:46.666Z |
size (MB) | 904 |
size (bytes) | 289624095 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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