mbhall88/Singularity_recipes:nanopolish

$ singularity pull shub://mbhall88/Singularity_recipes:nanopolish

Singularity Recipe

Bootstrap: debootstrap
OSVersion: bionic
MirrorURL: http://us.archive.ubuntu.com/ubuntu/

%help
  A container to hold the assembler nanopolish.
  Run `singularity exec nanopolish.simg canu`

%environment
  PATH=/usr/local/bin:$PATH

%post
    apt update
    apt install -y software-properties-common
    apt-add-repository universe
    apt update
    apt install -y wget build-essential git zlib1g-dev
    export LC_ALL=C.UTF-8
    export LANG=C.UTF-8
    echo 'export LC_ALL=C.UTF-8' >> $SINGULARITY_ENVIRONMENT
    echo 'export LANG=C.UTF-8' >> $SINGULARITY_ENVIRONMENT

    #================================
    # INSTALL NANOPOLISH
    #================================
    VERSION="0.9.2"
    git clone --recursive https://github.com/jts/nanopolish.git
    cd nanopolish
    git checkout v"$VERSION"
    make
    ln -s $(realpath nanopolish) /usr/local/bin/nanopolish

Collection


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Metrics

key value
id /containers/mbhall88-Singularity_recipes-nanopolish
collection name mbhall88/Singularity_recipes
branch master
tag nanopolish
commit 8df7771a981a19074c76bc57b1074f5381e3e8f8
version (container hash) 57fc0728f6aecd5f5c5844f737437cc7
build date 2020-05-15T06:49:43.805Z
size (MB) 1048
size (bytes) 340082719
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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