mbhall88/Singularity_recipes:nanopolish
$ singularity pull shub://mbhall88/Singularity_recipes:nanopolish
Singularity Recipe
Bootstrap: debootstrap
OSVersion: bionic
MirrorURL: http://us.archive.ubuntu.com/ubuntu/
%help
A container to hold the assembler nanopolish.
Run `singularity exec nanopolish.simg canu`
%environment
PATH=/usr/local/bin:$PATH
%post
apt update
apt install -y software-properties-common
apt-add-repository universe
apt update
apt install -y wget build-essential git zlib1g-dev
export LC_ALL=C.UTF-8
export LANG=C.UTF-8
echo 'export LC_ALL=C.UTF-8' >> $SINGULARITY_ENVIRONMENT
echo 'export LANG=C.UTF-8' >> $SINGULARITY_ENVIRONMENT
#================================
# INSTALL NANOPOLISH
#================================
VERSION="0.9.2"
git clone --recursive https://github.com/jts/nanopolish.git
cd nanopolish
git checkout v"$VERSION"
make
ln -s $(realpath nanopolish) /usr/local/bin/nanopolish
Collection
- Name: mbhall88/Singularity_recipes
- License: MIT License
View on Datalad
Metrics
key | value |
---|---|
id | /containers/mbhall88-Singularity_recipes-nanopolish |
collection name | mbhall88/Singularity_recipes |
branch | master |
tag | nanopolish |
commit | 8df7771a981a19074c76bc57b1074f5381e3e8f8 |
version (container hash) | 57fc0728f6aecd5f5c5844f737437cc7 |
build date | 2020-05-15T06:49:43.805Z |
size (MB) | 1048 |
size (bytes) | 340082719 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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