mbhall88/Singularity_recipes:minimap2

$ singularity pull shub://mbhall88/Singularity_recipes:minimap2

Singularity Recipe

Bootstrap: debootstrap
OSVersion: bionic
MirrorURL: http://us.archive.ubuntu.com/ubuntu/

%environment
  PATH=/usr/local/bin:$PATH

%post
    apt update
    apt install -y software-properties-common
    apt-add-repository universe
    apt update
    apt install -y wget build-essential
    export LC_ALL=C.UTF-8
    export LANG=C.UTF-8
    echo 'export LC_ALL=C.UTF-8' >> $SINGULARITY_ENVIRONMENT
    echo 'export LANG=C.UTF-8' >> $SINGULARITY_ENVIRONMENT

    # ================================
    # INSTALL minimap2
    # ================================
    VERSION="2.13"
    URL=https://github.com/lh3/minimap2/releases/download/v${VERSION}/minimap2-${VERSION}_x64-linux.tar.bz2
    wget "$URL" -O - | tar -jxf -
    cd minimap2-${VERSION}_x64-linux/ || exit 1
    echo "export PATH=$(pwd):$PATH" >> $SINGULARITY_ENVIRONMENT

Collection


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Metrics

key value
id /containers/mbhall88-Singularity_recipes-minimap2
collection name mbhall88/Singularity_recipes
branch master
tag minimap2
commit fc132841cea261394da0b6c6f4faf8e530ac0f33
version (container hash) 6c6677602765b02316ea579894054c7a
build date 2019-06-02T17:47:33.062Z
size (MB) 571
size (bytes) 206602271
SIF Download URL (please use pull with shub://)
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Singularity Recipe Singularity Recipe on Datalad
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