mbhall88/Singularity_recipes:minimap2
$ singularity pull shub://mbhall88/Singularity_recipes:minimap2
Singularity Recipe
Bootstrap: debootstrap
OSVersion: bionic
MirrorURL: http://us.archive.ubuntu.com/ubuntu/
%environment
PATH=/usr/local/bin:$PATH
%post
apt update
apt install -y software-properties-common
apt-add-repository universe
apt update
apt install -y wget build-essential
export LC_ALL=C.UTF-8
export LANG=C.UTF-8
echo 'export LC_ALL=C.UTF-8' >> $SINGULARITY_ENVIRONMENT
echo 'export LANG=C.UTF-8' >> $SINGULARITY_ENVIRONMENT
# ================================
# INSTALL minimap2
# ================================
VERSION="2.13"
URL=https://github.com/lh3/minimap2/releases/download/v${VERSION}/minimap2-${VERSION}_x64-linux.tar.bz2
wget "$URL" -O - | tar -jxf -
cd minimap2-${VERSION}_x64-linux/ || exit 1
echo "export PATH=$(pwd):$PATH" >> $SINGULARITY_ENVIRONMENT
Collection
- Name: mbhall88/Singularity_recipes
- License: MIT License
View on Datalad
Metrics
key | value |
---|---|
id | /containers/mbhall88-Singularity_recipes-minimap2 |
collection name | mbhall88/Singularity_recipes |
branch | master |
tag | minimap2 |
commit | fc132841cea261394da0b6c6f4faf8e530ac0f33 |
version (container hash) | 6c6677602765b02316ea579894054c7a |
build date | 2019-06-02T17:47:33.062Z |
size (MB) | 571 |
size (bytes) | 206602271 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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