mbhall88/Singularity_recipes:mccortex
$ singularity pull shub://mbhall88/Singularity_recipes:mccortex
Singularity Recipe
Bootstrap: debootstrap
OSVersion: bionic
MirrorURL: http://us.archive.ubuntu.com/ubuntu/
%environment
PATH=/usr/local/bin:$PATH
%test
cd ~/mccortex
make test
%post
apt update
apt install -y software-properties-common
apt-add-repository universe
apt update
apt install -y git wget build-essential
export LC_ALL=C.UTF-8
export LANG=C.UTF-8
echo 'export LC_ALL=C.UTF-8' >> $SINGULARITY_ENVIRONMENT
echo 'export LANG=C.UTF-8' >> $SINGULARITY_ENVIRONMENT
# ========================
# INSTALL mccortex
# ========================
apt install -y \
liblzma-dev \
libbz2-dev \
libz-dev \
libncurses5-dev \
zlib1g-dev \
r-base-core
cd ~/
COMMIT="400c0e322aae2d3563b4f1fad270fd95a878ba15"
git clone --recursive https://github.com/mcveanlab/mccortex
cd mccortex
git checkout "$COMMIT"
make all MAXK=31
make all MAXK=63
cd bin
echo "export PATH=$(pwd):$PATH" >> $SINGULARITY_ENVIRONMENT
Collection
- Name: mbhall88/Singularity_recipes
- License: MIT License
View on Datalad
Metrics
key | value |
---|---|
id | /containers/mbhall88-Singularity_recipes-mccortex |
collection name | mbhall88/Singularity_recipes |
branch | master |
tag | mccortex |
commit | 127e15583f2a83c4ded0f3078bb330e9eb5563dd |
version (container hash) | 9073f94a8aad34f1aa5dce57abda0f60 |
build date | 2018-11-07T17:43:25.551Z |
size (MB) | 1171 |
size (bytes) | 467419167 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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