mbhall88/Singularity_recipes:deepbinner
$ singularity pull shub://mbhall88/Singularity_recipes:deepbinner
Singularity Recipe
Bootstrap: debootstrap
OSVersion: bionic
MirrorURL: http://us.archive.ubuntu.com/ubuntu/
%help
A container to hold the nanopore barcode demultiplexer deepbinner.
Run `singularity exec deepbinner.simg deepbinner`
%environment
PATH=/usr/local/bin:$PATH
%post
apt update
apt install -y software-properties-common
apt-add-repository universe
apt update
apt install -y wget git python3-pip
export LC_ALL=C.UTF-8
export LANG=C.UTF-8
echo 'export LC_ALL=C.UTF-8' >> $SINGULARITY_ENVIRONMENT
echo 'export LANG=C.UTF-8' >> $SINGULARITY_ENVIRONMENT
#================================
# INSTALL DEEPBINNER
#================================
git clone https://github.com/rrwick/Deepbinner.git
cd Deepbinner
pip3 install -r requirements.txt
python3 setup.py install
Collection
- Name: mbhall88/Singularity_recipes
- License: MIT License
View on Datalad
Metrics
key | value |
---|---|
id | /containers/mbhall88-Singularity_recipes-deepbinner |
collection name | mbhall88/Singularity_recipes |
branch | master |
tag | deepbinner |
commit | 1b71b09c4ad747cd1e96ac7f1978522b31cc2b2d |
version (container hash) | 6812c725b250fb3dc783c2beb9f9a40a |
build date | 2020-05-15T07:00:06.524Z |
size (MB) | 1334 |
size (bytes) | 509128735 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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