mbhall88/Singularity_recipes:deepbinner

$ singularity pull shub://mbhall88/Singularity_recipes:deepbinner

Singularity Recipe

Bootstrap: debootstrap
OSVersion: bionic
MirrorURL: http://us.archive.ubuntu.com/ubuntu/

%help
  A container to hold the nanopore barcode demultiplexer deepbinner.
  Run `singularity exec deepbinner.simg deepbinner`

%environment
  PATH=/usr/local/bin:$PATH

%post
    apt update
    apt install -y software-properties-common
    apt-add-repository universe
    apt update
    apt install -y wget git python3-pip
    export LC_ALL=C.UTF-8
    export LANG=C.UTF-8
    echo 'export LC_ALL=C.UTF-8' >> $SINGULARITY_ENVIRONMENT
    echo 'export LANG=C.UTF-8' >> $SINGULARITY_ENVIRONMENT

    #================================
    # INSTALL DEEPBINNER
    #================================
    git clone https://github.com/rrwick/Deepbinner.git
    cd Deepbinner
    pip3 install -r requirements.txt
    python3 setup.py install

Collection


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Metrics

key value
id /containers/mbhall88-Singularity_recipes-deepbinner
collection name mbhall88/Singularity_recipes
branch master
tag deepbinner
commit 1b71b09c4ad747cd1e96ac7f1978522b31cc2b2d
version (container hash) 6812c725b250fb3dc783c2beb9f9a40a
build date 2020-05-15T07:00:06.524Z
size (MB) 1334
size (bytes) 509128735
SIF Download URL (please use pull with shub://)
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