mbhall88/Singularity_recipes:centrifuge
$ singularity pull shub://mbhall88/Singularity_recipes:centrifuge
Singularity Recipe
Bootstrap: debootstrap
OSVersion: bionic
MirrorURL: http://us.archive.ubuntu.com/ubuntu/
%environment
PATH=/usr/local/bin:$PATH
%post
apt update
apt install -y software-properties-common
apt-add-repository universe
apt update
apt install -y git wget build-essential
export LC_ALL=C.UTF-8
export LANG=C.UTF-8
echo 'export LC_ALL=C.UTF-8' >> $SINGULARITY_ENVIRONMENT
echo 'export LANG=C.UTF-8' >> $SINGULARITY_ENVIRONMENT
# ================================
# INSTALL centrifuge
# ================================
VERSION="88ecab483e32f1d1b54b2e155ddb34ea5806e511"
git clone https://github.com/infphilo/centrifuge.git
cd centrifuge*
git checkout "$VERSION"
make
make install prefix=/usr/local
cd ~
# need python2 for kreport
add-apt-repository ppa:deadsnakes/ppa
apt update
apt install -y python2.7
ln -s /usr/bin/python2.7 /usr/bin/python
Collection
- Name: mbhall88/Singularity_recipes
- License: MIT License
View on Datalad
Metrics
key | value |
---|---|
id | /containers/mbhall88-Singularity_recipes-centrifuge |
collection name | mbhall88/Singularity_recipes |
branch | master |
tag | centrifuge |
commit | a78d650dbf221e4014fcb11aa2fa04987af013c6 |
version (container hash) | 13bc12f41b20001f17e6f8811dc3eeea |
build date | 2019-11-06T14:49:46.720Z |
size (MB) | 678 |
size (bytes) | 241152031 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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