mbhall88/Singularity_recipes:centrifuge

$ singularity pull shub://mbhall88/Singularity_recipes:centrifuge

Singularity Recipe

Bootstrap: debootstrap
OSVersion: bionic
MirrorURL: http://us.archive.ubuntu.com/ubuntu/

%environment
  PATH=/usr/local/bin:$PATH

%post
    apt update
    apt install -y software-properties-common
    apt-add-repository universe
    apt update
    apt install -y git wget build-essential
    export LC_ALL=C.UTF-8
    export LANG=C.UTF-8
    echo 'export LC_ALL=C.UTF-8' >> $SINGULARITY_ENVIRONMENT
    echo 'export LANG=C.UTF-8' >> $SINGULARITY_ENVIRONMENT

    # ================================
    # INSTALL centrifuge
    # ================================
    VERSION="88ecab483e32f1d1b54b2e155ddb34ea5806e511"
    git clone https://github.com/infphilo/centrifuge.git
    cd centrifuge*
    git checkout "$VERSION"
    make
    make install prefix=/usr/local
    cd ~
    # need python2 for kreport
    add-apt-repository ppa:deadsnakes/ppa
    apt update
    apt install -y python2.7
    ln -s /usr/bin/python2.7 /usr/bin/python

Collection


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Metrics

key value
id /containers/mbhall88-Singularity_recipes-centrifuge
collection name mbhall88/Singularity_recipes
branch master
tag centrifuge
commit a78d650dbf221e4014fcb11aa2fa04987af013c6
version (container hash) 13bc12f41b20001f17e6f8811dc3eeea
build date 2019-11-06T14:49:46.720Z
size (MB) 678
size (bytes) 241152031
SIF Download URL (please use pull with shub://)
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Singularity Recipe Singularity Recipe on Datalad
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