mbhall88/Singularity_recipes:bcftools
$ singularity pull shub://mbhall88/Singularity_recipes:bcftools
Singularity Recipe
Bootstrap: debootstrap
OSVersion: bionic
MirrorURL: http://us.archive.ubuntu.com/ubuntu/
%environment
PATH=/usr/local/bin:$PATH
%post
apt update
apt install -y software-properties-common
apt-add-repository universe
apt update
apt install -y git wget build-essential
export LC_ALL=C.UTF-8
export LANG=C.UTF-8
echo 'export LC_ALL=C.UTF-8' >> $SINGULARITY_ENVIRONMENT
echo 'export LANG=C.UTF-8' >> $SINGULARITY_ENVIRONMENT
#================================
# INSTALL bcftools
#================================
VERSION="1.9"
URL=https://github.com/samtools/bcftools/releases/download/"$VERSION"/bcftools-"$VERSION".tar.bz2
apt install -y libbz2-dev \
zlib1g-dev \
libncurses5-dev \
libncursesw5-dev \
liblzma-dev
wget "$URL" -O - | tar -jxf -
cd bcftools*
./configure --prefix=/usr/local
make
make install
Collection
- Name: mbhall88/Singularity_recipes
- License: MIT License
View on Datalad
Metrics
key | value |
---|---|
id | /containers/mbhall88-Singularity_recipes-bcftools |
collection name | mbhall88/Singularity_recipes |
branch | master |
tag | bcftools |
commit | 8df7771a981a19074c76bc57b1074f5381e3e8f8 |
version (container hash) | c403791db8a14b00d536adca8e8e04fc |
build date | 2019-08-01T23:48:42.517Z |
size (MB) | 669 |
size (bytes) | 235917343 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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