mattocci27/singularity-radian:latest
$ singularity pull shub://mattocci27/singularity-radian:latest
Singularity Recipe
BootStrap: docker
From: ubuntu:focal
%labels
Maintainer mattocci
R_Version 4.0.2
%apprun radian
exec radian "${@}"
%apprun R
exec R "${@}"
%apprun Rscript
exec Rscript "${@}"
%runscript
exec R "${@}"
%post
# Software versions
export R_VERSION=4.0.2
# Get dependencies
apt-get update
apt-get install -y --no-install-recommends \
locales \
gnupg
# Configure default locale
echo "en_US.UTF-8 UTF-8" >> /etc/locale.gen
locale-gen en_US.utf8
/usr/sbin/update-locale LANG=en_US.UTF-8
export LC_ALL=en_US.UTF-8
export LANG=en_US.UTF-8
# Install R
echo "deb http://cran.r-project.org/bin/linux/ubuntu focal-cran40/" > /etc/apt/sources.list.d/r.list
apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E298A3A825C0D65DFD57CBB651716619E084DAB9
apt-get update
DEBIAN_FRONTEND=noninteractive apt-get install -y --no-install-recommends \
r-base=${R_VERSION}* \
r-base-core=${R_VERSION}* \
r-base-dev=${R_VERSION}* \
r-recommended=${R_VERSION}* \
r-base-html=${R_VERSION}* \
r-doc-html=${R_VERSION}* \
libcurl4-openssl-dev \
libssl-dev \
libxml2-dev \
libcairo2-dev \
libxt-dev \
libopenblas-openmp-dev \
libpython3-dev \
python3-dev \
python3-pip
# Add a default CRAN mirror
echo "options(repos = c(CRAN = 'https://cloud.r-project.org/'), download.file.method = 'libcurl')" >> /usr/lib/R/etc/Rprofile.site
# Add a directory for host R libraries
mkdir -p /library
echo "R_LIBS_SITE=/library:\${R_LIBS_SITE}" >> /usr/lib/R/etc/Renviron.site
# install radian
pip3 install -U radian
# Clean up
rm -rf /var/lib/apt/lists/*
Collection
- Name: mattocci27/singularity-radian
- License: MIT License
View on Datalad
Metrics
key | value |
---|---|
id | /containers/mattocci27-singularity-radian-latest |
collection name | mattocci27/singularity-radian |
branch | master |
tag | latest |
commit | 0e6113f9231ccaa3b3f93c08f863ca9f8b984dc2 |
version (container hash) | f1dc0e796665f344950e106107257fc2c05f6a3366f0843eabc26713505d0048 |
build date | 2020-07-07T03:51:23.642Z |
size (MB) | 284.69921875 |
size (bytes) | 298528768 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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