matmu/nanopore:latest
$ singularity pull shub://matmu/nanopore:latest
Singularity Recipe
Bootstrap: docker
From: matmu/nanopore:latest
%labels
Maintainer Matthias Munz <m.munz@uni-luebeck.de>
%help
Software for analysing Nanopore sequencing data.
Available programs:
samtools
minimap2
nanopolish
medaka
guppy_basecaller (CPU version)
guppy_aligner (CPU version)
guppy_barcoder (CPU version)
A minimap2 index for reference genome Homo_sapiens.GRCh38.dna.primary_assembly.fa.gz is available at /opt/Homo_sapiens.GRCh38.dna.primary_assembly.mmi
%environment
export PATH=/opt/nanopolish:/opt/ont-guppy-cpu/bin:/opt/nanopolish/minimap2:${PATH}
Collection
- Name: matmu/nanopore
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/matmu-nanopore-latest |
collection name | matmu/nanopore |
branch | master |
tag | latest |
commit | d96dfbc9ceab9cae031e38854c4f01961e68dd98 |
version (container hash) | 42faae0bfd74f2380a6a84f185bbf622 |
build date | 2020-04-21T01:55:11.237Z |
size (MB) | 9806.0 |
size (bytes) | 5180944415 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
Feedback
Was this page helpful?
Glad to hear it! Please tell us how we can improve.
Sorry to hear that. Please tell us how we can improve.