matmu/nanopore:latest

$ singularity pull shub://matmu/nanopore:latest

Singularity Recipe

Bootstrap: docker
From: matmu/nanopore:latest

%labels
Maintainer Matthias Munz <m.munz@uni-luebeck.de>

%help
Software for analysing Nanopore sequencing data.
Available programs: 
  samtools
  minimap2
  nanopolish
  medaka
  guppy_basecaller (CPU version)
  guppy_aligner (CPU version)
  guppy_barcoder (CPU version)

A minimap2 index for reference genome Homo_sapiens.GRCh38.dna.primary_assembly.fa.gz is available at /opt/Homo_sapiens.GRCh38.dna.primary_assembly.mmi

%environment
    export PATH=/opt/nanopolish:/opt/ont-guppy-cpu/bin:/opt/nanopolish/minimap2:${PATH}

Collection


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Metrics

key value
id /containers/matmu-nanopore-latest
collection name matmu/nanopore
branch master
tag latest
commit d96dfbc9ceab9cae031e38854c4f01961e68dd98
version (container hash) 42faae0bfd74f2380a6a84f185bbf622
build date 2020-04-21T01:55:11.237Z
size (MB) 9806.0
size (bytes) 5180944415
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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