marcpabst/processBIDS:latest

$ singularity pull shub://marcpabst/processBIDS:latest

Singularity Recipe

Bootstrap: docker
From: python:3.7.4-buster
%files
run.py /run.py
anon.py /anon.py
fieldmaps.py /fieldmaps.py
deface.py /deface.py
version /version
%post
# Use Ubuntu 16.04 LTS

pip3 install git+https://github.com/poldracklab/pydeface@cc38ca17c7b5a975fc908748fa1d52c1ebbc1d35 && \
pip3 install matplotlib  && \
pip3 install pybids  && \
pip3 install nose  && \
pip3 install nilearn  && \
pip3 install nibabel
    
# install FSL
wget -O- http://neuro.debian.net/lists/buster.de-m.full | tee /etc/apt/sources.list.d/neurodebian.sources.list
apt-key adv --recv-keys --keyserver hkp://pool.sks-keyservers.net:80 0xA5D32F012649A5A9 && \
apt-get update && \
apt-get -y install fsl-core





%runscript
exec /run.py "$@"
%startscript
exec /run.py "$@"

Collection


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Metrics

key value
id /containers/marcpabst-processBIDS-latest
collection name marcpabst/processBIDS
branch master
tag latest
commit 2ac3a598ca118f5c664365553134b024fb7c8516
version (container hash) 2b38ca0b66c30de24f7f250cbd258505
build date 2019-08-08T18:31:20.556Z
size (MB) 1759.0
size (bytes) 692449311
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
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