marcpabst/processBIDS:latest
$ singularity pull shub://marcpabst/processBIDS:latest
Singularity Recipe
Bootstrap: docker
From: python:3.7.4-buster
%files
run.py /run.py
anon.py /anon.py
fieldmaps.py /fieldmaps.py
deface.py /deface.py
version /version
%post
# Use Ubuntu 16.04 LTS
pip3 install git+https://github.com/poldracklab/pydeface@cc38ca17c7b5a975fc908748fa1d52c1ebbc1d35 && \
pip3 install matplotlib && \
pip3 install pybids && \
pip3 install nose && \
pip3 install nilearn && \
pip3 install nibabel
# install FSL
wget -O- http://neuro.debian.net/lists/buster.de-m.full | tee /etc/apt/sources.list.d/neurodebian.sources.list
apt-key adv --recv-keys --keyserver hkp://pool.sks-keyservers.net:80 0xA5D32F012649A5A9 && \
apt-get update && \
apt-get -y install fsl-core
%runscript
exec /run.py "$@"
%startscript
exec /run.py "$@"
Collection
- Name: marcpabst/processBIDS
- License: Apache License 2.0
View on Datalad
Metrics
key | value |
---|---|
id | /containers/marcpabst-processBIDS-latest |
collection name | marcpabst/processBIDS |
branch | master |
tag | latest |
commit | 2ac3a598ca118f5c664365553134b024fb7c8516 |
version (container hash) | 2b38ca0b66c30de24f7f250cbd258505 |
build date | 2019-08-08T18:31:20.556Z |
size (MB) | 1759.0 |
size (bytes) | 692449311 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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