marcjwilliams1/rstudiosrvrV4:latest
$ singularity pull shub://marcjwilliams1/rstudiosrvrV4:latest
Singularity Recipe
Bootstrap: docker
From: rocker/r-ver:4.0.3
%files
/rocker_scripts
%post
export S6_VERSION=v1.21.7.0
export RSTUDIO_VERSION=1.2.5042
export PATH=/usr/lib/rstudio-server/bin:$PATH
/rocker_scripts/install_rstudio.sh
/rocker_scripts/install_pandoc.sh
apt-get update
apt-get install -y apt-utils
set -e
apt-get update -qq && apt-get -y --no-install-recommends install \
libxml2-dev \
libbz2-dev \
zlib1g-dev \
libncurses5-dev \
libncursesw5-dev \
liblzma-dev \
libcairo2-dev \
xz-utils \
libgit2-dev \
libglpk-dev \
libxtst6 \
default-libmysqlclient-dev \
libpq-dev \
libsasl2-dev \
libsqlite3-dev \
libssh2-1-dev \
libgtk2.0-dev \
xvfb \
xauth \
libxt-dev \
xfonts-base \
libpng-dev
## other libraries listed in bioconductor https://hub.docker.com/r/bioconductor/bioconductor_full/dockerfile
apt-get update -qq && apt-get -y --no-install-recommends install \
libnetcdf-dev \
libhdf5-serial-dev \
libfftw3-dev \
libopenbabel-dev \
libopenmpi-dev \
libexempi8 \
libxt-dev \
libgdal-dev \
libjpeg8-dev \
libtiff5-dev \
libreadline-dev \
libgsl0-dev \
libgslcblas0 \
libgtk2.0-dev \
libgl1-mesa-dev \
libglu1-mesa-dev \
libgmp3-dev \
libhdf5-dev \
libncurses-dev \
libbz2-dev \
libxpm-dev \
liblapack-dev \
libv8-dev \
libgtkmm-2.4-dev \
libmpfr-dev \
libudunits2-dev \
libmodule-build-perl \
libapparmor-dev \
libgeos-dev \
libprotoc-dev \
librdf0-dev \
libmagick++-dev \
libsasl2-dev \
libpoppler-cpp-dev \
libprotobuf-dev \
libpq-dev \
libperl-dev \
libarchive-extract-perl \
libfile-copy-recursive-perl \
libcgi-pm-perl \
libdbi-perl \
libdbd-mysql-perl \
libxml-simple-perl \
sqlite \
openmpi-bin \
mpi-default-bin \
openmpi-common \
openmpi-doc \
tcl8.6-dev \
tk-dev \
default-jdk \
imagemagick \
tabix \
ggobi \
graphviz \
protobuf-compiler \
jags \
xfonts-100dpi \
xfonts-75dpi \
biber \
unixodbc-dev \
&& apt-get clean && \
rm -rf /var/lib/apt/lists/*
Collection
- Name: marcjwilliams1/rstudiosrvrV4
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/marcjwilliams1-rstudiosrvrV4-latest |
collection name | marcjwilliams1/rstudiosrvrV4 |
branch | main |
tag | latest |
commit | 7a4d2e39b7ad5960d589a1f629381d19adb077a1 |
version (container hash) | 7d466acd7b523a376be2f9e04fce1ff8 |
build date | 2021-04-19T10:30:16.949Z |
size (MB) | 3060.0 |
size (bytes) | 1055326239 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
Feedback
Was this page helpful?
Glad to hear it! Please tell us how we can improve.
Sorry to hear that. Please tell us how we can improve.