marcjwilliams1/dnds-clonesize-R-container:latest

$ singularity pull shub://marcjwilliams1/dnds-clonesize-R-container:latest

Singularity Recipe

BootStrap: docker
From: asachet/rocker-stan

%labels
  Maintainer Marc J Williams

%help
  Singularity image for following paper:

%post
  # add R packages from CRAN
  Rscript -e "install.packages(pkgs = c('devtools', 'cowplot', 'gtools', 'argparse','jcolors', 'ggthemes', 'viridis','Hmisc','ggridges', 'readxl',
  'bayesplot', 'modelr', 'ggforce', 'ggfortify', 'bayestestR'), \
      repos='https://cran.revolutionanalytics.com/', \
      dependencies=TRUE, \
      clean = TRUE)"

   #add R packages from bioconductor
   Rscript -e "install.packages('BiocManager')"
   Rscript -e "library(BiocManager); install('GenomicRanges')"
   Rscript -e "library(BiocManager); install('IRanges')"
   Rscript -e "library(BiocManager); install('Biostrings')"
   Rscript -e "library(BiocManager); install('Rsamtools')"
   Rscript -e "library(BiocManager); install('seqinr')"
   Rscript -e "library(BiocManager); install('rtracklayer')"

  # add R packages from github
   Rscript -e "library(devtools); install_github('marcjwilliams1/dndscv', ref = 'dev')"

Collection


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Metrics

key value
id /containers/marcjwilliams1-dnds-clonesize-R-container-latest
collection name marcjwilliams1/dnds-clonesize-R-container
branch master
tag latest
commit 299ad35d95e8a478dbb27ab92784d247593a23ee
version (container hash) 282e13ea3090576c1de36743fc7fa6cf
build date 2020-07-28T16:53:53.769Z
size (MB) 3622.0
size (bytes) 1521274911
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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