marcjwilliams1/dnds-clonesize-R-container:latest
$ singularity pull shub://marcjwilliams1/dnds-clonesize-R-container:latest
Singularity Recipe
BootStrap: docker
From: asachet/rocker-stan
%labels
Maintainer Marc J Williams
%help
Singularity image for following paper:
%post
# add R packages from CRAN
Rscript -e "install.packages(pkgs = c('devtools', 'cowplot', 'gtools', 'argparse','jcolors', 'ggthemes', 'viridis','Hmisc','ggridges', 'readxl',
'bayesplot', 'modelr', 'ggforce', 'ggfortify', 'bayestestR'), \
repos='https://cran.revolutionanalytics.com/', \
dependencies=TRUE, \
clean = TRUE)"
#add R packages from bioconductor
Rscript -e "install.packages('BiocManager')"
Rscript -e "library(BiocManager); install('GenomicRanges')"
Rscript -e "library(BiocManager); install('IRanges')"
Rscript -e "library(BiocManager); install('Biostrings')"
Rscript -e "library(BiocManager); install('Rsamtools')"
Rscript -e "library(BiocManager); install('seqinr')"
Rscript -e "library(BiocManager); install('rtracklayer')"
# add R packages from github
Rscript -e "library(devtools); install_github('marcjwilliams1/dndscv', ref = 'dev')"
Collection
- Name: marcjwilliams1/dnds-clonesize-R-container
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/marcjwilliams1-dnds-clonesize-R-container-latest |
collection name | marcjwilliams1/dnds-clonesize-R-container |
branch | master |
tag | latest |
commit | 299ad35d95e8a478dbb27ab92784d247593a23ee |
version (container hash) | 282e13ea3090576c1de36743fc7fa6cf |
build date | 2020-07-28T16:53:53.769Z |
size (MB) | 3622.0 |
size (bytes) | 1521274911 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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