marchoeppner/metagenomic-profiling:latest

$ singularity pull shub://marchoeppner/metagenomic-profiling:latest

Singularity Recipe

Bootstrap:docker
From:nfcore/base

%labels
    MAINTAINER Marc Hoeppner <m.hoeppner@ikmb.uni-kiel.de>
    DESCRIPTION Singularity image containing all requirements for the metagenomics-profile pipeline
    VERSION 1.0

%environment
    PATH=/opt/conda/envs/metagenomics-profiling-1.1/bin:$PATH
    export PATH

%files
    environment.yml /
%post

    /opt/conda/bin/conda env create -f /environment.yml
    /opt/conda/bin/conda clean -a
    mkdir -p /ifs
    apt-get -y install procps unzip
    mkdir -p /opt/trimmomatic && cd /opt/trimmomatic && wget http://www.usadellab.org/cms/uploads/supplementary/Trimmomatic/Trimmomatic-0.36.zip \
        && unzip Trimmomatic-0.36.zip && mv Trimmomatic-0.36 0.36 && rm Trimmomatic-0.36.zip

    cd /opt
    wget https://www.dropbox.com/sh/m4na8wefp53j8ej/AACU1-Nc0q2dUNRmc9pesUi4a/bin/bcftools

Collection


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Metrics

key value
id /containers/marchoeppner-metagenomic-profiling-latest
collection name marchoeppner/metagenomic-profiling
branch devel
tag latest
commit d4cb45600130356edd46d21439a801401fd9f589
version (container hash) 9ccdb3dcc88f43cd2826bbeecd2942408ca802242b2ffb0d4130dbee12af4b11
build date 2019-12-03T14:01:58.574Z
size (MB) 899.58203125
size (bytes) 943280128
SIF Download URL (please use pull with shub://)
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