marchoeppner/metagenomic-profiling:latest
$ singularity pull shub://marchoeppner/metagenomic-profiling:latest
Singularity Recipe
Bootstrap:docker
From:nfcore/base
%labels
MAINTAINER Marc Hoeppner <m.hoeppner@ikmb.uni-kiel.de>
DESCRIPTION Singularity image containing all requirements for the metagenomics-profile pipeline
VERSION 1.0
%environment
PATH=/opt/conda/envs/metagenomics-profiling-1.1/bin:$PATH
export PATH
%files
environment.yml /
%post
/opt/conda/bin/conda env create -f /environment.yml
/opt/conda/bin/conda clean -a
mkdir -p /ifs
apt-get -y install procps unzip
mkdir -p /opt/trimmomatic && cd /opt/trimmomatic && wget http://www.usadellab.org/cms/uploads/supplementary/Trimmomatic/Trimmomatic-0.36.zip \
&& unzip Trimmomatic-0.36.zip && mv Trimmomatic-0.36 0.36 && rm Trimmomatic-0.36.zip
cd /opt
wget https://www.dropbox.com/sh/m4na8wefp53j8ej/AACU1-Nc0q2dUNRmc9pesUi4a/bin/bcftools
Collection
- Name: marchoeppner/metagenomic-profiling
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/marchoeppner-metagenomic-profiling-latest |
collection name | marchoeppner/metagenomic-profiling |
branch | devel |
tag | latest |
commit | d4cb45600130356edd46d21439a801401fd9f589 |
version (container hash) | 9ccdb3dcc88f43cd2826bbeecd2942408ca802242b2ffb0d4130dbee12af4b11 |
build date | 2019-12-03T14:01:58.574Z |
size (MB) | 899.58203125 |
size (bytes) | 943280128 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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