marchoeppner/ikmb_amplicon_processing:latest
$ singularity pull shub://marchoeppner/ikmb_amplicon_processing:latest
Singularity Recipe
Bootstrap:docker
From:nfcore/base
%labels
MAINTAINER Marc Hoeppner <m.hoeppner@ikmb.uni-kiel.de>
DESCRIPTION Singularity image containing all requirements for the amplicon pipeline
VERSION 1.0
%environment
PATH=/opt/conda/envs/ikmb-amplicon-1.0/bin:/opt:$PATH
export PATH
%files
environment.yml /
bin/dada2_16S_workflow.R /opt
bin/dada2_16S_workflow_with_AR.R /opt
bin/dada2_archaea_workflow.R /opt
bin/dada2_fungi_workflow.R /opt
bin/make_dada2_project.R /opt
assets/rdp_species_assignment_16.fa.gz /opt
assets/RDP_v16-mod_March2018.RData /opt
assets/sh_general_release_dynamic_10.10.2017_dev.fasta /opt
assets/rdp_train_set_16.fa.gz /opt
assets/sh_general_release_dynamic_02.02.2019.fasta /opt
assets/silva_species_assignment_v132.fa.gz /opt
assets/silva_nr_v132_train_set.fa.gz /opt
%post
/opt/conda/bin/conda env create -f /environment.yml
/opt/conda/bin/conda clean -a
mkdir -p /ifs
apt-get -y install procps
cd /opt
chmod +x *.R
Collection
View on Datalad
Metrics
key | value |
---|---|
id | /containers/marchoeppner-ikmb_amplicon_processing-latest |
collection name | marchoeppner/ikmb_amplicon_processing |
branch | master |
tag | latest |
commit | 30a43651e3cdf50076256f405dd672e315b11e13 |
version (container hash) | 0aca19b7959f595814f0b3e71c7507616f9b6a13bd094d7a8485c383058b8287 |
build date | 2020-10-26T16:23:52.697Z |
size (MB) | 749.30078125 |
size (bytes) | 785698816 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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