marcc-hpc/octave:latest

$ singularity pull shub://marcc-hpc/octave:latest

Singularity Recipe

Bootstrap: docker
From: centos:latest

%environment
# use bash as default shell
SHELL=/bin/bash
export SHELL

%setup
# runs on host - the path to the image is $SINGULARITY_ROOTFS

%post
# MARCC mounts
mkdir /scratch /work-zfs /data

# post-setup script
yum -y install wget which # i like to download and know where things are

yum install -y epel-release
yum install -y octave octave-devel
OCTAVE_VERSION=`octave-cli --eval version|tail -1|cut -d\  -f3`
touch /usr/share/octave/$OCTAVE_VERSION/etc/built-in-docstrings

yum install -y git mercurial autoconf libtool flex unzip make

ompi=ompi
cd
git clone https://github.com/open-mpi/ompi.git $ompi
cd $ompi
./autogen.pl                                                     > ompi-install.log
./configure --prefix=/usr/local --enable-shared --enable-static >> ompi-install.log
make -j5                                                        >> ompi-install.log
make install                                                    >> ompi-install.log

export LD_CUSTOM_PATH=/usr/local/lib:/usr/local/lib/openmpi
export LD_LIBRARY_PATH=$LD_CUSTOM_PATH:$LD_LIBRARY_PATH
export LD_RUN_PATH=$LD_CUSTOM_PATH:$LD_RUN_PATH

octavempi=octavempi
cd
hg clone http://hg.code.sf.net/p/octave/mpi $octavempi
cd $octavempi
hg archive ../mpi.zip
octave-cli --eval 'pkg install ../mpi.zip'

Collection

• Name: marcc-hpc/octave
• License: None

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