marcc-hpc/biobakery:latest
$ singularity pull shub://marcc-hpc/biobakery:latest
Singularity Recipe
Bootstrap: docker
From: biobakery/biobakery:latest
%environment
# use bash as default shell
SHELL=/bin/bash
export SHELL
%setup
# runs on host - the path to the image is $SINGULARITY_ROOTFS
%post
# post-setup script
# load environment variables
. /environment
# use bash as default shell
echo 'SHELL=/bin/bash' >> /environment
# make environment file executable
chmod +x /environment
# default mount paths
mkdir /scratch /data
%runscript
# executes with the singularity run command
# delete this section to use existing docker ENTRYPOINT command
%test
# test that script is a success
Collection
- Name: marcc-hpc/biobakery
- License: MIT License
View on Datalad
Metrics
key | value |
---|---|
id | /containers/marcc-hpc-biobakery-latest |
collection name | marcc-hpc/biobakery |
branch | master |
tag | latest |
commit | ee378bf54c65fe544337315ecf1bcf78270f020b |
version (container hash) | ad88ff07845498ebb23df92d8398b393 |
build date | 2020-02-12T17:15:52.753Z |
size (MB) | 11265 |
size (bytes) | 5572186143 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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