marcc-hpc/atac-seq:latest
$ singularity pull shub://marcc-hpc/atac-seq:latest
Singularity Recipe
Bootstrap: docker
From: zhanglab/atac-seq:base
%environment
# use bash as default shell
SHELL=/bin/bash
export SHELL
%setup
# runs on host - the path to the image is $SINGULARITY_ROOTFS
%post
# post-setup script
# load environment variables
. /environment
# use bash as default shell
echo 'SHELL=/bin/bash' >> /environment
# make environment file executable
chmod +x /environment
# default mount paths
mkdir /scratch /data
%runscript
# executes with the singularity run command
# delete this section to use existing docker ENTRYPOINT command
%test
# test that script is a success
Collection
- Name: marcc-hpc/atac-seq
- License: MIT License
View on Datalad
Metrics
key | value |
---|---|
id | /containers/marcc-hpc-atac-seq-latest |
collection name | marcc-hpc/atac-seq |
branch | master |
tag | latest |
commit | 98a61eef2cf19dc76ae1800e5066f78e53e2e125 |
version (container hash) | a6f2c34a44b0444a227e9ba5300a1be9 |
build date | 2018-01-31T15:33:59.020Z |
size (MB) | 2912 |
size (bytes) | 1189576735 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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