magoapu/sing_af:ubuntu3
$ singularity pull shub://magoapu/sing_af:ubuntu3
Singularity Recipe
Bootstrap: docker
From: ubuntu:latest
%post
apt-get update && apt-get install -y libcurl4-gnutls-dev libxml2-dev libssl-dev libmariadb-client-lgpl-dev ibglib2.0-dev libcairo2-dev ghostscript
apt-get update && apt-get -y install r-base
apt-get update && apt-get install -y libxt-dev
Rscript -e 'install.packages("devtools", dependencies = TRUE)'
Rscript -e 'library(devtools); install_github("brentp/celltypes450")'
Rscript -e 'source("https://bioconductor.org/biocLite.R"); biocLite("sva")'
Rscript -e 'source("https://bioconductor.org/biocLite.R"); biocLite(pkgs=c("minfi","FlowSorted.Blood.450k"))'
Rscript -e 'source("https://bioconductor.org/biocLite.R"); biocLite(pkgs=c("DEXSeq","impute","wateRmelon","methylumi"))'
Rscript -e 'install.packages(c("gam","Hmisc","devtools","MASS","lmtest","markdown","Cairo","knitr","doParallel","compareGroups","MatrixEQTL","plyr","dplyr","matrixStats","sandwich","ggplot2","glmnet","parallel"))'
Rscript -e 'install.packages("devtools", dependencies = TRUE)'
Rscript -e 'library(devtools); install_github("brentp/celltypes450")'
Rscript -e 'source("https://bioconductor.org/biocLite.R"); biocLite("sva")'
Rscript -e 'source("https://bioconductor.org/biocLite.R"); biocLite(pkgs=c("minfi","FlowSorted.Blood.450k"))'
Rscript -e 'source("https://bioconductor.org/biocLite.R"); biocLite(pkgs=c("DEXSeq","impute","wateRmelon","methylumi"))'
Rscript -e 'install.packages(c("gam","Hmisc","devtools","MASS","lmtest","markdown","Cairo","knitr","doParallel","compareGroups","MatrixEQTL","plyr","dplyr","matrixStats","sandwich","ggplot2","glmnet","parallel"))'
Collection
- Name: magoapu/sing_af
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/magoapu-sing_af-ubuntu3 |
collection name | magoapu/sing_af |
branch | master |
tag | ubuntu3 |
commit | c7355df6ca820b9d28dc407228f7f1b9e9301579 |
version (container hash) | 71aad75350fa06471108d498ce35f47c |
build date | 2019-02-25T16:42:17.560Z |
size (MB) | 2360 |
size (bytes) | 1206079519 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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