magland/sf_spyking_circus:v0.1.0

$ singularity pull shub://magland/sf_spyking_circus:v0.1.0

Singularity Recipe

Bootstrap: docker

From: continuumio/miniconda3


%runscript

    cd /src/spikeforest/spikeforest/sf_batch
    python driver_sf_batch.py run $*

%files

%environment


%labels

   AUTHOR jmagland@flatironinstitute.org

%post
	#########################################
	### Conda and python 3.6
	apt-get update
  apt-get -y install git wget
  apt-get install -y build-essential

  . /opt/conda/etc/profile.d/conda.sh
  conda activate base
  conda install python=3.6

  #########################################
  ### SpikeForest
  mkdir /src

  git clone https://github.com/magland/spikeforest /src/spikeforest

  cd /src/spikeforest
  pip install pybind11
  pip install isosplit5
  python setup.py develop

  #########################################
  ### Spyking Circus

  apt-get install -y libopenmpi-dev
  pip install spyking-circus
  pip install pyqt5
  apt-get install -y libglib2.0-0
  apt-get install -y libgl1-mesa-glx

Collection


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Metrics

key value
id /containers/magland-sf_spyking_circus-v0.1.0
collection name magland/sf_spyking_circus
branch master
tag v0.1.0
commit 46da1b500a5292cd65c2f5dad58ac8fa53015899
version (container hash) ff02cdf60fab60681234bfd6aa78eda1
build date 2018-11-15T15:58:30.765Z
size (MB) 1886
size (bytes) 771530783
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
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