mafreitas/singularity-openms:contrib

$ singularity pull shub://mafreitas/singularity-openms:contrib

Singularity Recipe

BootStrap: shub
From: mafreitas/singularity-openms:dependencies

%environment
LD_LIBRARY_PATH=/usr/local/lib/:$LD_LIBRARY_PATH

%post
# build java
echo oracle-java8-installer shared/accepted-oracle-license-v1-1 select true | debconf-set-selections
add-apt-repository -y ppa:webupd8team/java
apt-get -y update
apt-get install -y oracle-java8-installer
apt-get clean
apt-get purge
rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/*

# build contrib
cd $HOME
git clone https://github.com/OpenMS/contrib.git
rm -rf contrib/.git/
mkdir contrib-build
cd $HOME/contrib-build

cmake -DBUILD_TYPE=SEQAN ../contrib && rm -rf archives src
cmake -DBUILD_TYPE=WILDMAGIC ../contrib && rm -rf archives src
cmake -DBUILD_TYPE=EIGEN ../contrib && rm -rf archives src
cmake -DBUILD_TYPE=COINOR ../contrib && rm -rf archives src
cmake -DBUILD_TYPE=SQLITE ../contrib && rm -rf archives src

Collection

• Name: mafreitas/singularity-openms
• License: None

Metrics

Feedback

Was this page helpful?

Glad to hear it! Please tell us how we can improve.

Sorry to hear that. Please tell us how we can improve.