littleblackfish/apis-methylation:latest

$ singularity pull shub://littleblackfish/apis-methylation:latest

Singularity Recipe

bootstrap: docker
From: jupyter/datascience-notebook

%help

%post
  export PATH=/opt/conda/bin:$PATH
  echo "install.packages('Rcapture', repos = 'http://cran.us.r-project.org')" > /opt/Rinstall
  Rscript /opt/Rinstall

  apt -y update
  apt -y install libmysqlclient-dev libcurl4-openssl-dev

  pip install biopython
  pip install gffutils
  pip install matplotlib-venn
  pip install tqdm
  pip install pyranges
  pip install plotly

%environment
  export XDG_RUNTIME_DIR=/tmp/apis-jupyter/$(id -u)/runtime
  export XDG_CACHE_HOME=/tmp/apis-jupyter/$(id -u)/cache
  export HOME=/tmp/apis-jupyter/$(id -u)/home
	
%runscript 
  tini jupyter -- notebook --no-browser

Collection

• Name: littleblackfish/apis-methylation
• License: None

Metrics

Feedback

Was this page helpful?

Glad to hear it! Please tell us how we can improve.

Sorry to hear that. Please tell us how we can improve.