kristinebilgrav/Retro_files:latest

$ singularity pull shub://kristinebilgrav/Retro_files:latest

Singularity Recipe

Bootstrap: docker
From: ubuntu:16.04

%environment
SHELL=/bin/bash
PATH=/opt/anaconda/bin:${PATH}
LC_ALL=C.UTF-8
ROOTSYS=/opt/root/
LD_LIBRARY_PATH=/opt/root/lib


%runscript
    echo "This is what happens when you run the container..."
    export PATH=/opt/anaconda/bin:${PATH}

%post
    echo "Hello from inside the container"
    apt-get update
    apt-get -y install wget git bzip2 build-essential gcc zlib1g-dev language-pack-en-base apt-transport-https make cmake unzip libncurses5-dev libncursesw5-dev
    update-locale LC_ALL=en_US.UTF-8 LANG=en_US.UTF-8

    cd /root/ && wget https://repo.continuum.io/miniconda/Miniconda2-latest-Linux-x86_64.sh
    cd /root/ && chmod 700 ./Miniconda2-latest-Linux-x86_64.sh
    cd /root/ && bash ./Miniconda2-latest-Linux-x86_64.sh -b -p /opt/anaconda/   
    
    export PATH=/opt/anaconda/bin:${PATH} 
    
    conda install -c bioconda samtools=0.1.19
    conda install -c bioconda bcftools
    conda install -c bioconda BEDTools
    
    cd /bin/ && git clone https://github.com/tk2/RetroSeq.git

Collection


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Metrics

key value
id /containers/kristinebilgrav-Retro_files-latest
collection name kristinebilgrav/Retro_files
branch main
tag latest
commit 5deb744b2938c70316d3983e391654b7baae5834
version (container hash) d6fe1fc608ebb69dcf37605e6782a336
build date 2021-01-28T13:07:31.183Z
size (MB) 928.0
size (bytes) 399802399
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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