kristinebilgrav/Retro_files:latest
$ singularity pull shub://kristinebilgrav/Retro_files:latest
Singularity Recipe
Bootstrap: docker
From: ubuntu:16.04
%environment
SHELL=/bin/bash
PATH=/opt/anaconda/bin:${PATH}
LC_ALL=C.UTF-8
ROOTSYS=/opt/root/
LD_LIBRARY_PATH=/opt/root/lib
%runscript
echo "This is what happens when you run the container..."
export PATH=/opt/anaconda/bin:${PATH}
%post
echo "Hello from inside the container"
apt-get update
apt-get -y install wget git bzip2 build-essential gcc zlib1g-dev language-pack-en-base apt-transport-https make cmake unzip libncurses5-dev libncursesw5-dev
update-locale LC_ALL=en_US.UTF-8 LANG=en_US.UTF-8
cd /root/ && wget https://repo.continuum.io/miniconda/Miniconda2-latest-Linux-x86_64.sh
cd /root/ && chmod 700 ./Miniconda2-latest-Linux-x86_64.sh
cd /root/ && bash ./Miniconda2-latest-Linux-x86_64.sh -b -p /opt/anaconda/
export PATH=/opt/anaconda/bin:${PATH}
conda install -c bioconda samtools=0.1.19
conda install -c bioconda bcftools
conda install -c bioconda BEDTools
cd /bin/ && git clone https://github.com/tk2/RetroSeq.git
Collection
- Name: kristinebilgrav/Retro_files
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/kristinebilgrav-Retro_files-latest |
collection name | kristinebilgrav/Retro_files |
branch | main |
tag | latest |
commit | 5deb744b2938c70316d3983e391654b7baae5834 |
version (container hash) | d6fe1fc608ebb69dcf37605e6782a336 |
build date | 2021-01-28T13:07:31.183Z |
size (MB) | 928.0 |
size (bytes) | 399802399 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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