kkleinoros/imputePrepSanger:imputeprepsanger
$ singularity pull shub://kkleinoros/imputePrepSanger:imputeprepsanger
Singularity Recipe
Bootstrap: docker
From: centos:6.9
%labels
Maintainer Natacha Beck && Marie Forest
%files
. imputePrepSanger
%post
yum update -y
yum install -y bzip2 \
gcc \
git \
make \
perl \
unzip \
wget \
zlib-devel \
which
chmod 644 /imputePrepSanger/checkPositions.awk
chmod 755 /imputePrepSanger/update_build.sh \
&& cp /imputePrepSanger/update_build.sh /bin/
chmod 755 /imputePrepSanger/imputePrep_script.sh \
&& cp /imputePrepSanger/imputePrep_script.sh /bin/
chmod 755 /imputePrepSanger/HRC-1000G-check-bim_v4.2.7.pl \
&& cp /imputePrepSanger/HRC-1000G-check-bim_v4.2.7.pl /bin/
chmod 755 /imputePrepSanger/reportRedaction.sh \
&& cp /imputePrepSanger/reportRedaction.sh /bin/
wget https://github.com/samtools/bcftools/releases/download/1.3.1/bcftools-1.3.1.tar.bz2 \
&& bunzip2 -f bcftools-1.3.1.tar.bz2 \
&& tar -xvf bcftools-1.3.1.tar \
&& cd bcftools-1.3.1 \
&& make \
&& make install \
&& cp bcftools /bin/ \
unzip /imputePrepSanger/plink_linux_x86_64.zip -d /imputePrepSanger/plink \
&& cp /imputePrepSanger/plink/plink /bin/
%runscript
cd /imputePrepSanger/
Collection
- Name: kkleinoros/imputePrepSanger
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/kkleinoros-imputePrepSanger-imputeprepsanger |
collection name | kkleinoros/imputePrepSanger |
branch | master |
tag | imputeprepsanger |
commit | 2d68cff664bdc2ac06deb1840a464def0e2908f0 |
version (container hash) | bdb1e3faa641005807e1a7674fae5d36 |
build date | 2018-08-30T10:21:13.082Z |
size (MB) | 517 |
size (bytes) | 162557983 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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