kirsho/star26:latest

$ singularity pull shub://kirsho/star26:latest

Singularity Recipe

Bootstrap: docker

From: continuumio/miniconda3


%files
    star26.yml

%environment
    PATH=/opt/conda/envs/$(head -1  star26.yml | cut -d' ' -f2)/bin:$PATH                # Change $PATH

%post
    echo "Creating a Singularity Container of my star26 Conda Env"                # What I'm doing
    echo ". /opt/conda/etc/profile.d/conda.sh" >> ~/.bashrc                       # enable conda for the current
    echo "conda activate $(head -1  star26.yml | cut -d' ' -f2)" >> ~/.bashrc            # will start "ngs3" conda env
    apt-get update && apt-get -y install nano tree htop wget build-essential            # Install
#   /opt/conda/bin/conda update -n base -c defaults conda                    # Update Conda
    /opt/conda/bin/conda env create -f star26.yml                            # Conda create my env

%runscript
    exec "$@"

%labels
    Maintainer olivier.kirsh@u-paris.fr                                # Merci qui?
    Version v1.0 20190702

Collection


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Metrics

key value
id /containers/kirsho-star26-latest
collection name kirsho/star26
branch master
tag latest
commit c1414833eaafa043987c1327ed05a50b18143e9e
version (container hash) d13e39f06042ffe09ae51925cdc77dc5
build date 2019-09-16T12:33:31.387Z
size (MB) 837
size (bytes) 289316895
SIF Download URL (please use pull with shub://)
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