kirsho/ngs2:latest

$ singularity pull shub://kirsho/ngs2:latest

Singularity Recipe

Bootstrap: docker

From: continuumio/miniconda3


%files
    ngs2.yml

%environment
    PATH=/opt/conda/envs/$(head -1  ngs2.yml | cut -d' ' -f2)/bin:$PATH				# Change $PATH

%post
    echo "Creating a Singularity Container of my ngs2 Conda Env"				# What I'm doing
    echo ". /opt/conda/etc/profile.d/conda.sh" >> ~/.bashrc   					# enable conda for the current 
    echo "conda activate $(head -1  ngs2.yml | cut -d' ' -f2)" >> ~/.bashrc			# will start "ngs2" conda env 
    apt-get update && apt-get -y install nano tree htop wget build-essential			# Install 
    /opt/conda/bin/conda update -n base -c defaults conda					# Update Conda
    /opt/conda/bin/conda env create -f ngs2.yml							# Conda create my env

%runscript
    exec "$@"

%labels
    Maintainer olivier.kirsh@u-paris.fr								# Merci qui?
    Version v1.0 20190701

Collection

• Name: kirsho/ngs2
• License: None

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