khanlab/neuroglia-dwi:v1.0.0

$ singularity pull shub://khanlab/neuroglia-dwi:v1.0.0

Singularity Recipe

Bootstrap: shub
From: khanlab/neuroglia-core:v1.0.0

%labels
Maintainer "Ali Khan"

#########
%setup
#########
mkdir -p $SINGULARITY_ROOTFS/src
cp -Rv . $SINGULARITY_ROOTFS/src

#########
%post
#########


cd /src

# checkout specific git release 
SINGULARITY_TAG=${SINGULARITY_BUILDDEF#Singularity.}
if [ ! "$SINGULARITY_TAG" = "Singularity" ]
then
  git checkout $SINGULARITY_TAG
fi

export DEBIAN_FRONTEND=noninteractive
cd /src/install_scripts
bash 21.install_MRtrix3_by_source_sudo.sh /opt
bash 28.install_camino_by_source.sh /opt
bash 29.install_unring_by_binary.sh /opt
bash 30.install_dke_by_binary.sh /opt

rm -rf /src

#########
%environment


#MRtrix3
export PATH=/opt/mrtrix3/bin:$PATH


#camino
export PATH=/opt/camino/bin:$PATH
export LD_LIBRARY_PATH=/opt/camino/lib:$LD_LIBRARY_PATH
export MANPATH=/opt/camino/lib:$MANPATH
export CAMINO_HEAP_SIZE=32000

#unring
export PATH=/opt/unring/bin:$PATH


#dke
export PATH=/opt/dke:$PATH

Collection

• Name: khanlab/neuroglia-dwi
• License: None

Metrics

Feedback

Was this page helpful?

Glad to hear it! Please tell us how we can improve.

Sorry to hear that. Please tell us how we can improve.