khanlab/dicom2tar:v0.0.5

$ singularity pull shub://khanlab/dicom2tar:v0.0.5

Singularity Recipe

Bootstrap: docker
From: ubuntu:xenial

#------------------------------------
%setup
#------------------------------------

mkdir -p $SINGULARITY_ROOTFS/apps

#------------------------------------
%post
#------------------------------------

export DEBIAN_FRONTEND=noninteractive
apt-get update && apt-get install -y --no-install-recommends apt-utils \
    sudo \
    git \
    wget \
    curl \
    zip \
    unzip \
    python2.7 \
    python-pip \
    rsync \
    openssh-client

sudo pip install --upgrade pip
sudo pip install --upgrade setuptools
sudo pip install dicom2tar

#dicomunwrap, will install pydicom
cd /apps
git clone https://gitlab.com/cfmm/DicomRaw
cd DicomRaw
sudo pip install -r requirements.txt
%environment
export PATH=/apps/DicomRaw/bin:$PATH

%runscript 
exec dicom2tar "$@"

Collection


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Metrics

key value
id /containers/khanlab-dicom2tar-v0.0.5
collection name khanlab/dicom2tar
branch master
tag v0.0.5
commit 741bfe01e83000e7be1eb3eeaa444eaddcd2f4d2
version (container hash) dd66305677e49159bf8cb6199ad80c17
build date 2021-01-18T18:23:53.273Z
size (MB) 296
size (bytes) 130215967
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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