kavonrtep/SeqGrapheR:latest

$ singularity pull shub://kavonrtep/SeqGrapheR:latest

Singularity Recipe

Bootstrap: docker
From: ubuntu:20.04
%files
    ./R_install.R  /opt/R_install.R
    ./SeqGrapheR   /usr/local/bin/SeqGrapheR

%post
    export DEBIAN_FRONTEND=noninteractive
    apt-get -y update
    apt-get -y install ncbi-blast+-legacy acedb-other-dotter staden ggobi
    apt-get -y install r-base libcurl4-openssl-dev libxml2-dev libgtk2.0-dev libssl-dev
    apt-get -y install build-essential gfortran libblas-dev liblapack-dev r-cran-future
    apt-get -y install r-bioc-biostrings r-cran-rggobi r-cran-gwidgets r-cran-gwidgetsrgtk2
    apt-get -y install r-cran-devtools r-cran-cairodevice r-cran-igraph
    apt-get -y install libatk-adaptor 
    Rscript /opt/R_install.R
    

%environment
    export LC_ALL=C
    export PATH=/usr/games:$PATH
    export NO_AT_BRIDGE=1

%runscript
    SeqGrapheR
%labels
    Author petr@umbr.cas.cz
    Version v0.0.1

Collection


View on Datalad

Metrics

key value
id /containers/kavonrtep-SeqGrapheR-latest
collection name kavonrtep/SeqGrapheR
branch master
tag latest
commit 4c828754e2c2f9c97978f20abbbe816d7baba32f
version (container hash) 256141241986c653d4cb04b3f6a97619
build date 2021-04-13T15:53:41.511Z
size (MB) 1919.0
size (bytes) 705200159
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
We cannot guarantee that all containers will still exist on GitHub.