kavonrtep/SeqGrapheR:latest
$ singularity pull shub://kavonrtep/SeqGrapheR:latest
Singularity Recipe
Bootstrap: docker
From: ubuntu:20.04
%files
./R_install.R /opt/R_install.R
./SeqGrapheR /usr/local/bin/SeqGrapheR
%post
export DEBIAN_FRONTEND=noninteractive
apt-get -y update
apt-get -y install ncbi-blast+-legacy acedb-other-dotter staden ggobi
apt-get -y install r-base libcurl4-openssl-dev libxml2-dev libgtk2.0-dev libssl-dev
apt-get -y install build-essential gfortran libblas-dev liblapack-dev r-cran-future
apt-get -y install r-bioc-biostrings r-cran-rggobi r-cran-gwidgets r-cran-gwidgetsrgtk2
apt-get -y install r-cran-devtools r-cran-cairodevice r-cran-igraph
apt-get -y install libatk-adaptor
Rscript /opt/R_install.R
%environment
export LC_ALL=C
export PATH=/usr/games:$PATH
export NO_AT_BRIDGE=1
%runscript
SeqGrapheR
%labels
Author petr@umbr.cas.cz
Version v0.0.1
Collection
- Name: kavonrtep/SeqGrapheR
- License: GNU General Public License v3.0
View on Datalad
Metrics
key | value |
---|---|
id | /containers/kavonrtep-SeqGrapheR-latest |
collection name | kavonrtep/SeqGrapheR |
branch | master |
tag | latest |
commit | 4c828754e2c2f9c97978f20abbbe816d7baba32f |
version (container hash) | 256141241986c653d4cb04b3f6a97619 |
build date | 2021-04-13T15:53:41.511Z |
size (MB) | 1919.0 |
size (bytes) | 705200159 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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