kapsakcj/singularities:spades.3.13.0

$ singularity pull shub://kapsakcj/singularities:spades.3.13.0

Singularity Recipe

Bootstrap: docker
From: centos:7.6.1810

%help
### This is the help for building a singularity image from a recipe (sudo priveleges required).
### To build me into an image, run:
    sudo singularity build my-new-spades-image.simg /path/to/spades/3.13.0/Singularity
### If the image already exists, add the --force flag to overwrite
    sudo singularity build --force my-new-spades-image.simg /path/to/spades/3.13.0/Singularity

#### Then to run in an interactive shell run:
    singularity shell my-new-spades-image.simg
    spades.py [spades options]

#### To run without interactive shell
    singularity exec my-new-spades-image.simg spades.py [spades options]

%labels
    MAINTAINER Curtis Kapsak
    SINGULARITY-IMAGE-VERSION 1.0.0
    SOFTWARE-VERSION 3.13.0

%environment
    PATH=${PATH}:/SPAdes-3.13.0-Linux/bin
    export PATH

%post
    yum -y update
    yum -y install wget python
    wget http://cab.spbu.ru/files/release3.13.0/SPAdes-3.13.0-Linux.tar.gz
    tar -xzf SPAdes-3.13.0-Linux.tar.gz
    rm -r SPAdes-3.13.0-Linux.tar.gz
    mkdir /data

%runscript
    echo "This runscript shows SPAdes help options"
    spades.py --help
    echo ""
    echo ""
    echo ""
    echo 'Run "singularity help name-of-spades-image.simg" for more help on running the image'
    echo ""

Collection


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Metrics

key value
id /containers/kapsakcj-singularities-spades.3.13.0
collection name kapsakcj/singularities
branch master
tag spades.3.13.0
commit 016d5784764d2e4e82b20cf2b226b36ba801f4c4
version (container hash) ed5e8f8a26d615628fff0eb2c6e256fa
build date 2019-08-15T03:18:12.930Z
size (MB) 318
size (bytes) 113897503
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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