kalebabram/singularity_rstudio:latest
$ singularity pull shub://kalebabram/singularity_rstudio:latest
Singularity Recipe
Bootstrap: shub
From: kalebabram/singularity_r
%help
This will run RStudio server
%environment
export PATH=/usr/lib/rstudio-server/bin:${PATH}
%post
# Software versions
export RSTUDIO_LATEST=$(wget --no-check-certificate -qO- https://s3.amazonaws.com/rstudio-server/current.ver)
# Install RStudio Server
apt-get update
apt-get install -y --no-install-recommends \
ca-certificates \
wget \
gdebi-core
wget \
--no-verbose \
-O rstudio-server.deb \
"https://download2.rstudio.org/rstudio-server-${RSTUDIO_LATEST}-amd64.deb"
gdebi -n rstudio-server.deb
rm -f rstudio-server.deb
# run install scripts
wget https://raw.githubusercontent.com/kalebabram/singularity_rstudio/master/RNAmmer_1.0.tar.gz
wget https://raw.githubusercontent.com/kalebabram/singularity_rstudio/master/Prodigal_2.0.tar.gz
wget https://raw.githubusercontent.com/kalebabram/singularity_rstudio/master/build.R
chmod 777 /build.R
Rscript /build.R
# Clean up
rm -rf /var/lib/apt/lists/*
%labels
RStudio_version 1.1.419
%apprun rserver
exec rserver "${@}"
%runscript
exec rserver "${@}"
Collection
- Name: kalebabram/singularity_rstudio
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/kalebabram-singularity_rstudio-latest |
collection name | kalebabram/singularity_rstudio |
branch | master |
tag | latest |
commit | 8bc789756666cd8285c057b143259e81c9cc682d |
version (container hash) | b0afed0ab0372de9a6027550941c0051 |
build date | 2020-03-05T10:53:07.387Z |
size (MB) | 1422 |
size (bytes) | 472473631 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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