kalebabram/singularity_r:latest
$ singularity pull shub://kalebabram/singularity_r:latest
Singularity Recipe
BootStrap: docker
From: ubuntu:16.04
%labels
Maintainer Kaleb Abram
R_Version 3.4.3
%apprun R
exec R "${@}"
%apprun Rscript
exec Rscript "${@}"
%runscript
exec R "${@}"
%post
# Software versions
export R_VERSION=3.4.3
# Get dependencies
apt-get update
apt-get install -y --no-install-recommends \
locales \
wget \
libmariadb-client-lgpl-dev
# Configure default locale
echo "en_US.UTF-8 UTF-8" >> /etc/locale.gen
locale-gen en_US.utf8
/usr/sbin/update-locale LANG=en_US.UTF-8
export LC_ALL=en_US.UTF-8
export LANG=en_US.UTF-8
# Install R
echo "deb http://cran.r-project.org/bin/linux/ubuntu xenial/" > /etc/apt/sources.list.d/r.list
apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E084DAB9
apt-get update
apt-get install -y --no-install-recommends \
r-base=${R_VERSION}* \
r-base-dev=${R_VERSION}* \
r-recommended=${R_VERSION}* \
libcurl4-openssl-dev \
libssl-dev \
libxml2-dev \
# Clean up
rm -rf /var/lib/apt/lists/*
Collection
- Name: kalebabram/singularity_r
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/kalebabram-singularity_r-latest |
collection name | kalebabram/singularity_r |
branch | master |
tag | latest |
commit | 3f8bae4d428648e0945b3bc982c2c38e8028a409 |
version (container hash) | 4815b95f991e9c500722752018a9b633 |
build date | 2018-02-01T11:37:40.333Z |
size (MB) | 590 |
size (bytes) | 230719519 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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