johnbradley/rnaseq-singularity:latest

$ singularity pull shub://johnbradley/rnaseq-singularity:latest

Singularity Recipe

Bootstrap: yum
OSVersion: 7
MirrorURL: http://mirror.centos.org/centos-%{OSVERSION}/%{OSVERSION}/os/$basearch/ 
Include: yum

%runscript
    echo "This is what happens when you run the container..."


%post
    echo "Hello from inside the container"
    yum -y update
    yum -y install vim-minimal bzip2-devel sqlite-devel xz-devel tk-devel gdbm-devel readline-devel openssl-devel git vim wget gcc make bzip2 patch gcc-c++
    wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh
    bash Miniconda3-latest-Linux-x86_64.sh -b -p /opt/miniconda
    export PATH="/opt/miniconda/bin:$PATH"
    conda install -c bioconda fastqc

Collection


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Metrics

key value
id /containers/johnbradley-rnaseq-singularity-latest
collection name johnbradley/rnaseq-singularity
branch master
tag latest
commit e559dd55a4159b4ec15464c6889d382abb60d9d8
version (container hash) eba0e3bd44b8b8803f329b9bf7aa0070
build date 2019-07-23T07:49:20.854Z
size (MB) 1408
size (bytes) 714235935
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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