johnbradley/rnaseq-singularity:latest
$ singularity pull shub://johnbradley/rnaseq-singularity:latest
Singularity Recipe
Bootstrap: yum
OSVersion: 7
MirrorURL: http://mirror.centos.org/centos-%{OSVERSION}/%{OSVERSION}/os/$basearch/
Include: yum
%runscript
echo "This is what happens when you run the container..."
%post
echo "Hello from inside the container"
yum -y update
yum -y install vim-minimal bzip2-devel sqlite-devel xz-devel tk-devel gdbm-devel readline-devel openssl-devel git vim wget gcc make bzip2 patch gcc-c++
wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh
bash Miniconda3-latest-Linux-x86_64.sh -b -p /opt/miniconda
export PATH="/opt/miniconda/bin:$PATH"
conda install -c bioconda fastqc
Collection
- Name: johnbradley/rnaseq-singularity
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/johnbradley-rnaseq-singularity-latest |
collection name | johnbradley/rnaseq-singularity |
branch | master |
tag | latest |
commit | e559dd55a4159b4ec15464c6889d382abb60d9d8 |
version (container hash) | eba0e3bd44b8b8803f329b9bf7aa0070 |
build date | 2019-07-23T07:49:20.854Z |
size (MB) | 1408 |
size (bytes) | 714235935 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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