joe-from-mtl/oxford_emitos:latest

$ singularity pull shub://joe-from-mtl/oxford_emitos:latest

Singularity Recipe

Bootstrap: docker
From: continuumio/miniconda3:4.4.10

%environment
# This sets global environment variables for anything run within the container
export PATH="/opt/conda/bin:/usr/local/bin:/user/bin:/bin:"
unset CONDA_DEFAULT_ENV
export ANACONDA_HOME=/opt/conda

%post
export PATH=/opt/conda/bin:$PATH
conda config --add channels defaults
conda config --add channels conda-forge
conda config --add channels bioconda
conda config --add channels pytorch
conda install --yes python=3.6.*
conda install --yes ipython
conda install --yes jupyter
conda install --yes numpy
conda install --yes scipy
conda install --yes scikit-image
conda install --yes scikit-learn
conda install --yes matplotlib
conda install --yes imageio
conda install --yes nextflow
conda install --yes graphviz
conda clean --index-cache --tarballs --packages --yes

Collection

• Name: joe-from-mtl/oxford_emitos
• License: None

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