jlboat/BioinfoContainers:vcftools

$ singularity pull shub://jlboat/BioinfoContainers:vcftools

Singularity Recipe

Bootstrap: docker

From: ubuntu:latest

%labels
    Topic Bioinformatics
    Input VCF
    vcftools latest

%help
    singularity run vcftools.simg -h

%post
    apt-get update --fix-missing && apt-get install -y git autoconf g++ zlib1g gcc make automake pkg-config zlib1g-dev curl perl libcurl4-gnutls-dev libbz2-dev liblzma-dev
    cd /opt/
    git clone https://github.com/vcftools/vcftools.git
    cd vcftools
    ./autogen.sh
    ./configure
    make
    make install
    chmod -R 777 /opt/vcftools
    cd /opt/
    git clone https://github.com/samtools/htslib
    cd htslib
    autoheader
    autoconf
    ./configure
    make
    make install
    chmod -R 777 /opt/htslib

%runscript
    exec "$@"

Collection


View on Datalad

Metrics

key value
id /containers/jlboat-BioinfoContainers-vcftools
collection name jlboat/BioinfoContainers
branch master
tag vcftools
commit 350eaa3618b50b6102b5130c111f14beb3ddd248
version (container hash) 4b1666de3bfbcf8710f12ff76c45dcfe
build date 2021-04-19T05:43:25.916Z
size (MB) 565
size (bytes) 192614431
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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