jlboat/BioinfoContainers:vcftools
$ singularity pull shub://jlboat/BioinfoContainers:vcftools
Singularity Recipe
Bootstrap: docker
From: ubuntu:latest
%labels
Topic Bioinformatics
Input VCF
vcftools latest
%help
singularity run vcftools.simg -h
%post
apt-get update --fix-missing && apt-get install -y git autoconf g++ zlib1g gcc make automake pkg-config zlib1g-dev curl perl libcurl4-gnutls-dev libbz2-dev liblzma-dev
cd /opt/
git clone https://github.com/vcftools/vcftools.git
cd vcftools
./autogen.sh
./configure
make
make install
chmod -R 777 /opt/vcftools
cd /opt/
git clone https://github.com/samtools/htslib
cd htslib
autoheader
autoconf
./configure
make
make install
chmod -R 777 /opt/htslib
%runscript
exec "$@"
Collection
- Name: jlboat/BioinfoContainers
- License: MIT License
View on Datalad
Metrics
key | value |
---|---|
id | /containers/jlboat-BioinfoContainers-vcftools |
collection name | jlboat/BioinfoContainers |
branch | master |
tag | vcftools |
commit | 350eaa3618b50b6102b5130c111f14beb3ddd248 |
version (container hash) | 4b1666de3bfbcf8710f12ff76c45dcfe |
build date | 2021-04-19T05:43:25.916Z |
size (MB) | 565 |
size (bytes) | 192614431 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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