jlboat/BioinfoContainers:trimmomatic

$ singularity pull shub://jlboat/BioinfoContainers:trimmomatic

Singularity Recipe

Bootstrap: docker

From: ubuntu:latest

%post
    apt-get update --fix-missing && apt-get install -y wget
    apt-get install -y zip
    apt-get install -y default-jre
    wget --quiet http://www.usadellab.org/cms/uploads/supplementary/Trimmomatic/Trimmomatic-0.38.zip -O /opt/Trimmomatic-0.38.zip
    unzip /opt/Trimmomatic-0.38.zip

%runscript
    exec java -jar /Trimmomatic-0.38/trimmomatic-0.38.jar "$@"

Collection


View on Datalad

Metrics

key value
id /containers/jlboat-BioinfoContainers-trimmomatic
collection name jlboat/BioinfoContainers
branch master
tag trimmomatic
commit 5f15386e1057282311ce1b4a7cae3f747425ed6b
version (container hash) 5ce48ddf51d112b4a96f6ce95aba8c57
build date 2021-03-06T01:04:48.545Z
size (MB) 504
size (bytes) 188510239
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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