jlboat/BioinfoContainers:star
$ singularity pull shub://jlboat/BioinfoContainers:star
Singularity Recipe
Bootstrap: docker
From: debian:latest
%labels
Topic Bioinformatics
Input FASTQ
Output BAM
STAR latest
%help
singularity run star.simg STAR
%environment
PATH=$PATH:/STAR/bin/Linux_x86_64/
%post
apt-get update --fix-missing && apt-get install -y git make g++ libz-dev && rm -rf /var/lib/apt/lists/*
git clone https://github.com/alexdobin/STAR.git
chmod -R 777 /STAR
cd STAR/source
make STAR
apt-get remove -y git make g++
%runscript
exec "$@"
Collection
- Name: jlboat/BioinfoContainers
- License: MIT License
View on Datalad
Metrics
key | value |
---|---|
id | /containers/jlboat-BioinfoContainers-star |
collection name | jlboat/BioinfoContainers |
branch | master |
tag | star |
commit | 01fd237ed1c7688e532770e499b506f0d189a7b5 |
version (container hash) | 88ebb66c8cf1ca3e0f819b211bc099dd |
build date | 2020-04-16T12:33:41.468Z |
size (MB) | 761 |
size (bytes) | 532652063 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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