jlboat/BioinfoContainers:star

$ singularity pull shub://jlboat/BioinfoContainers:star

Singularity Recipe

Bootstrap: docker

From: debian:latest

%labels
    Topic Bioinformatics
    Input FASTQ
    Output BAM
    STAR latest

%help
singularity run star.simg STAR

%environment
    PATH=$PATH:/STAR/bin/Linux_x86_64/

%post
    apt-get update --fix-missing && apt-get install -y git make g++ libz-dev && rm -rf /var/lib/apt/lists/*
    git clone https://github.com/alexdobin/STAR.git
    chmod -R 777 /STAR
    cd STAR/source
    make STAR
    apt-get remove -y git make g++

%runscript
    exec "$@"

Collection


View on Datalad

Metrics

key value
id /containers/jlboat-BioinfoContainers-star
collection name jlboat/BioinfoContainers
branch master
tag star
commit 01fd237ed1c7688e532770e499b506f0d189a7b5
version (container hash) 88ebb66c8cf1ca3e0f819b211bc099dd
build date 2020-04-16T12:33:41.468Z
size (MB) 761
size (bytes) 532652063
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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