jlboat/BioinfoContainers:snpeff

$ singularity pull shub://jlboat/BioinfoContainers:snpeff

Singularity Recipe

Bootstrap: docker

From: debian:latest

%labels
    Topic Bioinformatics
    snpeff conda-latest

%help
    singularity run --app snpEff snpeff.simg 
    singularity run --app snpSift snpeff.simg 

%post
    apt-get update --fix-missing && apt-get install -y openjdk-8-jre wget unzip
    wget http://sourceforge.net/projects/snpeff/files/snpEff_latest_core.zip
    unzip snpEff_latest_core.zip
    
%apprun snpEff
    exec java -jar /snpEff/snpEff.jar "$@"

%apphelp snpEff
    singularity run --app snpEff snpeff.simg

%apprun snpSift
    exec java -jar /snpEff/SnpSift.jar "$@"

%apphelp snpSift
    singularity run --app snpSift snpeff.simg

Collection


View on Datalad

Metrics

key value
id /containers/jlboat-BioinfoContainers-snpeff
collection name jlboat/BioinfoContainers
branch master
tag snpeff
commit 3cfec3b1a9b5e851e46175990878fda7ab571cfd
version (container hash) 196c81451e575d280df908ae80077090
build date 2020-02-27T08:59:09.143Z
size (MB) 768
size (bytes) 348659743
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
We cannot guarantee that all containers will still exist on GitHub.