jlboat/BioinfoContainers:snpeff
$ singularity pull shub://jlboat/BioinfoContainers:snpeff
Singularity Recipe
Bootstrap: docker
From: debian:latest
%labels
Topic Bioinformatics
snpeff conda-latest
%help
singularity run --app snpEff snpeff.simg
singularity run --app snpSift snpeff.simg
%post
apt-get update --fix-missing && apt-get install -y openjdk-8-jre wget unzip
wget http://sourceforge.net/projects/snpeff/files/snpEff_latest_core.zip
unzip snpEff_latest_core.zip
%apprun snpEff
exec java -jar /snpEff/snpEff.jar "$@"
%apphelp snpEff
singularity run --app snpEff snpeff.simg
%apprun snpSift
exec java -jar /snpEff/SnpSift.jar "$@"
%apphelp snpSift
singularity run --app snpSift snpeff.simg
Collection
- Name: jlboat/BioinfoContainers
- License: MIT License
View on Datalad
Metrics
key | value |
---|---|
id | /containers/jlboat-BioinfoContainers-snpeff |
collection name | jlboat/BioinfoContainers |
branch | master |
tag | snpeff |
commit | 3cfec3b1a9b5e851e46175990878fda7ab571cfd |
version (container hash) | 196c81451e575d280df908ae80077090 |
build date | 2020-02-27T08:59:09.143Z |
size (MB) | 768 |
size (bytes) | 348659743 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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