jlboat/BioinfoContainers:samtools

$ singularity pull shub://jlboat/BioinfoContainers:samtools

Singularity Recipe

Bootstrap: docker

From: ubuntu:latest

%post
    apt-get update --fix-missing && apt-get install -y wget make zlib1g-dev gcc \
        pkg-config autoconf libncurses5-dev libbz2-dev liblzma-dev libcurl4-gnutls-dev libssl-dev
    cd /opt/
    wget --quiet https://github.com/samtools/samtools/releases/download/1.9/samtools-1.9.tar.bz2
    tar xvfj samtools-1.9.tar.bz2
    rm samtools-1.9.tar.bz2
    cd samtools-1.9
    ./configure
    make
    make install
    chmod -R 777 /opt/*

%runscript
    exec samtools "$@"

Collection


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Metrics

key value
id /containers/jlboat-BioinfoContainers-samtools
collection name jlboat/BioinfoContainers
branch master
tag samtools
commit 5f15386e1057282311ce1b4a7cae3f747425ed6b
version (container hash) c84f59ff4a9044323908da588663c150
build date 2019-05-08T15:11:14.483Z
size (MB) 441
size (bytes) 153260063
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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