jlboat/BioinfoContainers:limma-voom

$ singularity pull shub://jlboat/BioinfoContainers:limma-voom

Singularity Recipe

Bootstrap: docker
From: rocker/verse:3.5.1

%post
    R -e "install.packages('BiocManager', repos='http://cran.us.r-project.org');"
    R -e "BiocManager::install(c('limma','edgeR','Glimma','tximport','ComplexHeatmap','alpine','alpineData','GenomicAlignments','rtracklayer','ensembldb','GenomicRanges'))"
    R -e "install.packages(c('ggplot2','readr','tidyr','RColorBrewer','DT','knitr','rmarkdown'), repos='https://cloud.r-project.org/')"

%runscript
    exec Rscript "$@"

Collection


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Metrics

key value
id /containers/jlboat-BioinfoContainers-limma-voom
collection name jlboat/BioinfoContainers
branch master
tag limma-voom
commit 5f15386e1057282311ce1b4a7cae3f747425ed6b
version (container hash) 98b2d97f318e15c4cb98a2e84a3787f2
build date 2019-05-08T15:11:14.332Z
size (MB) 2600
size (bytes) 993087519
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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