jlboat/BioinfoContainers:limma-voom
$ singularity pull shub://jlboat/BioinfoContainers:limma-voom
Singularity Recipe
Bootstrap: docker
From: rocker/verse:3.5.1
%post
R -e "install.packages('BiocManager', repos='http://cran.us.r-project.org');"
R -e "BiocManager::install(c('limma','edgeR','Glimma','tximport','ComplexHeatmap','alpine','alpineData','GenomicAlignments','rtracklayer','ensembldb','GenomicRanges'))"
R -e "install.packages(c('ggplot2','readr','tidyr','RColorBrewer','DT','knitr','rmarkdown'), repos='https://cloud.r-project.org/')"
%runscript
exec Rscript "$@"
Collection
- Name: jlboat/BioinfoContainers
- License: MIT License
View on Datalad
Metrics
key | value |
---|---|
id | /containers/jlboat-BioinfoContainers-limma-voom |
collection name | jlboat/BioinfoContainers |
branch | master |
tag | limma-voom |
commit | 5f15386e1057282311ce1b4a7cae3f747425ed6b |
version (container hash) | 98b2d97f318e15c4cb98a2e84a3787f2 |
build date | 2019-05-08T15:11:14.332Z |
size (MB) | 2600 |
size (bytes) | 993087519 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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