jlboat/BioinfoContainers:finestructure
$ singularity pull shub://jlboat/BioinfoContainers:finestructure
Singularity Recipe
Bootstrap: docker
From: ubuntu:latest
%help
Commands on PATH:
beagle2chromopainter.pl
chromopainter2chromopainterv2.pl
convertrecfile.pl
finestructuregreedy.sh
impute2chromopainter.pl
makeuniformrecfile.pl
msms2cp.pl
phasescreen.pl
phasesubsample.pl
plink2chromopainter.pl
qsub_run.sh
%environment
export PATH=$PATH:/opt/fs_4.0.1/
%post
apt-get update --fix-missing && apt-get install -y wget make libgsl-dev unzip automake libwxgtk3.0-dev wx-common build-essential
cpan -f Switch
cd /opt
wget https://people.maths.bris.ac.uk/~madjl/finestructure/fs_4.0.1.zip
unzip fs_4.0.1.zip
#wget https://people.maths.bris.ac.uk/~madjl/finestructure/finestructure-0.1.0GUI.tar.gz
#tar -xzvf finestructure-0.1.0GUI.tar.gz
#cd finestructure-0.1.0/gui
#./configure
#make
#make install
chmod -R 777 /opt/fs_4.0.1/
%runscript
exec "$@"
Collection
- Name: jlboat/BioinfoContainers
- License: MIT License
View on Datalad
Metrics
key | value |
---|---|
id | /containers/jlboat-BioinfoContainers-finestructure |
collection name | jlboat/BioinfoContainers |
branch | master |
tag | finestructure |
commit | 5f15386e1057282311ce1b4a7cae3f747425ed6b |
version (container hash) | 2440a75a4d72c1613ffa08b4a2ccfeb9 |
build date | 2019-05-08T15:11:14.149Z |
size (MB) | 660 |
size (bytes) | 226115615 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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