jlboat/BioinfoContainers:deeptools
$ singularity pull shub://jlboat/BioinfoContainers:deeptools
Singularity Recipe
Bootstrap: docker
From: debian:latest
%post
apt-get update --fix-missing && apt-get install -y wget bzip2 ca-certificates \
libglib2.0-0 libxext6 libsm6 libxrender1 \
git mercurial subversion
wget --quiet https://repo.anaconda.com/archive/Anaconda3-5.3.0-Linux-x86_64.sh -O ~/anaconda.sh && \
/bin/bash ~/anaconda.sh -b -p /opt/conda && \
rm ~/anaconda.sh && \
ln -s /opt/conda/etc/profile.d/conda.sh /etc/profile.d/conda.sh && \
echo ". /opt/conda/etc/profile.d/conda.sh" >> ~/.bashrc && \
echo "conda activate base" >> ~/.bashrc
apt-get install -y curl grep sed dpkg && \
TINI_VERSION=`curl https://github.com/krallin/tini/releases/latest | grep -o "/v.*\"" | sed 's:^..\(.*\).$:\1:'` && \
curl -L "https://github.com/krallin/tini/releases/download/v${TINI_VERSION}/tini_${TINI_VERSION}.deb" > tini.deb && \
dpkg -i tini.deb && \
rm tini.deb && \
apt-get clean
/opt/conda/bin/conda install -c bioconda deeptools
/opt/conda/bin/conda clean -a
%runscript
exec /opt/conda/bin/"$@"
Collection
- Name: jlboat/BioinfoContainers
- License: MIT License
View on Datalad
Metrics
key | value |
---|---|
id | /containers/jlboat-BioinfoContainers-deeptools |
collection name | jlboat/BioinfoContainers |
branch | master |
tag | deeptools |
commit | 5f15386e1057282311ce1b4a7cae3f747425ed6b |
version (container hash) | d096f52689f50da37bb4d43762f18997 |
build date | 2019-09-24T17:41:40.692Z |
size (MB) | 3209 |
size (bytes) | 1028837407 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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